Evidence map›Paper›PMID 26136263›Full record

ArticleJournal of experimental botany2015

Guanine nucleotide exchange factor 2 for Rab5 proteins coordinated with GLUP6/GEF regulates the intracellular transport of the proglutelin from the Golgi apparatus to the protein storage vacuole in rice endosperm.

Liuying Wen, Masako Fukuda, Mariko Sunada, Sonoko Ishino, Yoshizumi Ishino, Thomas W Okita, Masahiro Ogawa, Takashi Ueda, Toshihiro Kumamaru

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Vesicle trafficking in rice: too little is known.Frontiers in plant science · 2023
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. International journal of molecular sciences · 2018
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Liuying WenFaculty of Agriculture, Kyushu University, Fukuoka 812-8581, Japan Tobacco Research Institute, Chinese Academy of Agricultural Science, Qingdao 266101, China.
Masako FukudaFaculty of Agriculture, Kyushu University, Fukuoka 812-8581, Japan.
Mariko SunadaGraduated School of Science, University of Tokyo, Tokyo 113-0033, Japan.
Sonoko IshinoFaculty of Agriculture, Kyushu University, Fukuoka 812-8581, Japan.
Yoshizumi IshinoFaculty of Agriculture, Kyushu University, Fukuoka 812-8581, Japan.
Thomas W OkitaInstitute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.
Masahiro OgawaDepartment of General Education, Yamaguchi Prefectural University, Yamaguchi 753-8502, Japan.
Takashi UedaGraduated School of Science, University of Tokyo, Tokyo 113-0033, Japan Japan Science and Technology Agency (JST), PRESTO, Saitama 332-0012, Japan.
Toshihiro KumamaruFaculty of Agriculture, Kyushu University, Fukuoka 812-8581, Japan kumamaru@agr.kyushu-u.ac.jp.
Kyushu University · JPTokyo University of Science · JPWashington State University · USYamaguchi Prefectural University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rice glutelin polypeptides are initially synthesized on the endoplasmic reticulum (ER) membrane as a proglutelin, which are then transported to the protein storage vacuole (PSV) via the Golgi apparatus. Rab5 and its cognate activator guanine nucleotide exchange factor (GEF) are essential for the intracellular transport of proglutelin from the Golgi apparatus to the PSV. Results from previous studies showed that the double recessive type of glup4/rab5a and glup6/gef mutant accumulated much higher amounts of proglutelin than either parent line. The present study demonstrates that the double recessive type of glup4/rab5a and glup6/gef mutant showed not only elevated proglutelin levels and much larger paramural bodies but also reduced the number and size of PSVs, indicating a synergistic mutation effect. These observations led us to the hypothesis that other isoforms of Rab5 and GEF also participate in the intracellular transport of rice glutelin. A database search identified a novel guanine nucleotide exchange factor, Rab5-GEF2. Like GLUP6/GEF, Rab5-GEF2 was capable of activating Rab5a and two other Rab5 isoforms in in vitro GTP/GDP exchange assays. GEF proteins consist of the helical bundle (HB) domain at the N-terminus, Vps9 domain, and a C-terminal region. By the deletion analysis of GEFs, the HB domain was found essential for the activation of Rab5 proteins.

Indexed as

EndospermGlutensGolgi ApparatusGuanine Nucleotide Exchange FactorsMolecular Sequence DataMutationOryzaPlant ProteinsProtein Transportrab5 GTP-Binding ProteinsSequence Analysis, DNAVacuolesGlutensGuanine Nucleotide Exchange FactorsPlant Proteinsrab5 GTP-Binding ProteinsGuanine nucleotide exchange factorhelical bundle domainintracellular transportin vitro GEF assayRab5storage protein.

Identifiers

PMID26136263
PMCPMC4588877
OpenAlexW2096508601

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.