Evidence map›Paper›PMID 26201056›Full record

ReviewProteomics. Clinical applications2016

Transition from identity to bioactivity-guided proteomics for biomarker discovery with focus on the PF2D platform.

Antoine Ménoret, Stephen J Crocker, Annabelle Rodriguez, Vijay A Rathinam, Robert B Clark, Anthony T Vella

Abstract readReview
In one paragraph

Review in Proteomics. Clinical applications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Astrocytic TIMP-1 regulates production of Anastellin, an inhibitor of oligodendrocyte differentiation and FTY720 responses.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Antoine MénoretDepartment of Immunology, University of Connecticut Health Center, Farmington, CT, USA.
Stephen J CrockerDepartment of Neuroscience, University of Connecticut Health Center, Farmington, CT, USA.
Annabelle RodriguezDepartment of Cell Biology, University of Connecticut Health Center, Farmington, CT, USA.
Vijay A RathinamDepartment of Immunology, University of Connecticut Health Center, Farmington, CT, USA.
Robert B ClarkDepartment of Immunology, University of Connecticut Health Center, Farmington, CT, USA.
Anthony T VellaDepartment of Immunology, University of Connecticut Health Center, Farmington, CT, USA.

Funding

Lympocyte Activation Gene-3 Deficiency Linked to Proinflammation and AtherosclerosisR01HL131862 · NHLBI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI RODRIGUEZ, ANNABELLE · 2016 to 2019
$3.0M
NHLBI NIH HHS R01 HL131862
6 · The paper itself

Abstract

Proteomic strategies provide a valuable tool kit to identify proteins involved in diseases. With recent progress in MS technology, high throughput proteomics has accelerated protein identification for potential biomarkers. Numerous biomarker candidates have been identified in several diseases, and many are common among pathologies. An overall strategy that could complement and strengthen the search for biomarkers is combining protein identity with biological outcomes. This review describes an emerging framework of bridging bioactivity to protein identity, exploring the possibility that some biomarkers will have a mechanistic role in the disease process. A review of pulmonary, cardiovascular, and CNS biomarkers will be discussed to demonstrate the utility of combining bioactivity with identification as a means to not only find meaningful biomarkers, but also to uncover functional mediators of disease.

Indexed as

AnimalsBiomarkersCardiovascular DiseasesCentral Nervous System DiseasesHumansLung DiseasesProteomicsBiomarkersAcute respiratory distress syndromeAsthmaAtherosclerosisBioassayInflammationMultiple sclerosisProteoformPTMsValidation assay

Identifiers

PMID26201056
PMCPMC6644731

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.