Evidence map›Paper›PMID 26238514›Full record

ArticleNeurogenetics2015

Mutations in ARID2 are associated with intellectual disabilities.

Linshan Shang, Megan T Cho, Kyle Retterer, Leandra Folk, Jennifer Humberson, Luis Rohena, Alpa Sidhu, Sheila Saliganan, Alejandro Iglesias, Patrik Vitazka and 4 more

Abstract read
PubMed Publisher
In one paragraph

Article in Neurogenetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 80 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. The role of the polybromo-associated BAF complex in development.Biochemistry and cell biology = Biochimie et biologie cellulaire · 2025
    Review
  8. Article
  9. Frameshift Variant inJournal of pediatric genetics · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Discovering a new part of the phenotypic spectrum of Coffin-Siris syndrome in a fetal cohort.Genetics in medicine : official journal of the American College of Medical Genetics · 2022
    Article
  17. Reprogramming of the epigenome in neurodevelopmental disorders.Critical reviews in biochemistry and molecular biology · 2022
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Linshan ShangDepartment of Pediatrics, Columbia University Medical Center, 1150 St. Nicholas Avenue, New York, NY, 10032, USA.
Megan T ChoGeneDx, Gaithersburg, MD, USA.
Kyle RettererGeneDx, Gaithersburg, MD, USA.
Leandra FolkGeneDx, Gaithersburg, MD, USA.
Jennifer HumbersonDepartment of Pediatrics, Division of Genetics and Metabolism, University of Virginia, Charlottesville, VA, USA.
Luis RohenaDepartment of Pediatrics, Division of Genetics, San Antonio Military Medical Center, San Antonio, TX, USA.
Alpa SidhuDepartment of Pediatrics and Human Development, Michigan State University, East Lansing, MI, USA.
Sheila SaligananDepartment of Pediatrics and Human Development, Michigan State University, East Lansing, MI, USA.
Alejandro IglesiasDepartment of Pediatrics, Columbia University Medical Center, 1150 St. Nicholas Avenue, New York, NY, 10032, USA.
Patrik VitazkaGeneDx, Gaithersburg, MD, USA.
Jane JuusolaGeneDx, Gaithersburg, MD, USA.
Anne H O'Donnell-LuriaAnalytical and Translational Genetics Unit, Massachusetts General Hospital, Boston, MA, USA.
Yufeng ShenDepartment of System Biology and Biomedical Informatics, Columbia University Medical Center, New York, NY, 10032, USA.
Wendy K ChungDepartment of Pediatrics, Columbia University Medical Center, 1150 St. Nicholas Avenue, New York, NY, 10032, USA. wkc15@columbia.edu.
Columbia University Irving Medical Center · USMichigan State University · USBoston Children's Hospital · USSan Antonio Military Medical Center · USUniversity of Virginia · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The etiology of intellectual disabilities (ID) remains unknown for the majority of patients. Due to reduced reproductive fitness in many individuals with ID, de novo mutations account for a significant portion of severe ID. The ATP-dependent SWI/SNF chromatin modifier has been linked with neurodevelopmental disorders including ID and autism. ARID2 is an intrinsic component of polybromo-associated BAF (PBAF), the SWI/SNF subcomplex. In this study, we used clinical whole exome sequencing (WES) in proband-parent-trios to identify the etiology of ID. We identified four independent, novel, loss of function variants in ARID2 gene in four patients, three of which were confirmed to be de novo. The patients all have ID and share other clinical characteristics including attention deficit hyperactivity disorder, short stature, dysmorphic facial features, and Wormian bones. All four novel variants are predicted to lead to a premature termination with the loss of the two conservative zinc finger motifs. This is the first report of mutations in ARID2 associated with developmental delay and ID.

Indexed as

MutationAdolescentChildDevelopmental DisabilitiesExomeFemaleHumansIntellectual DisabilityMaleTranscription FactorsARID2 protein, humanTranscription FactorsARID2De novo mutationsIntellectual disabilitiesSWI/SNF chromatin modifierWhole exome sequencing

Identifiers

PMID26238514
OpenAlexW1060577180

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.