Evidence map›Paper›PMID 26408264›Full record

ArticleChemistry and physics of lipids2016

A facile stable-isotope dilution method for determination of sphingosine phosphate lyase activity.

Jung H Suh, Abeer Eltanawy, Apoorva Rangan, Julie D Saba

Abstract read
In one paragraph

Article in Chemistry and physics of lipids, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jung H SuhChildren's Hospital Oakland Research Institute, UCSF Benioff Children's Hospital Oakland, 5700 Martin Luther King Jr. Way, Oakland, CA 94609, United States.
Abeer EltanawyChildren's Hospital Oakland Research Institute, UCSF Benioff Children's Hospital Oakland, 5700 Martin Luther King Jr. Way, Oakland, CA 94609, United States.
Apoorva RanganChildren's Hospital Oakland Research Institute, UCSF Benioff Children's Hospital Oakland, 5700 Martin Luther King Jr. Way, Oakland, CA 94609, United States.
Julie D SabaChildren's Hospital Oakland Research Institute, UCSF Benioff Children's Hospital Oakland, 5700 Martin Luther King Jr. Way, Oakland, CA 94609, United States. Electronic address: jsaba@chori.org.
UCSF Benioff Children's Hospital · US

Funding

S1P Lyase in colon cancerR01CA129438 · NCI · CHILDREN'S HOSPITAL & RES CTR AT OAKLAND · PI SABA, JULIE D · 2007 to 2017
$3.2M
Sphingolipid Metabolism in Drosophila DevelopmentR01GM066954 · NIGMS · CHILDREN'S HOSPITAL &RES CTR AT OAKLAND · PI SABA, JULIE D · 2003 to 2013
$2.5M
Agilent 6490 Triple Quadrupole Mass SpectrometerS10OD018070 · OD · CHILDREN'S HOSPITAL & RES CTR AT OAKLAND · PI SABA, JULIE D · 2014 to 2014
$523k
NCI NIH HHS 3R01CA129438-07S1NCI NIH HHS NIH/NCI CA129438NCI NIH HHS R01 CA129438NIGMS NIH HHS R01 GM066954NIH HHS S10 OD018070NIH HHS S10 OD018070-01
6 · The paper itself

Abstract

A new technique for quantifying sphingosine phosphate lyase activity in biological samples is described. In this procedure, 2-hydrazinoquinoline is used to convert (2E)-hexadecenal into the corresponding hydrazone derivative to improve ionization efficiency and selectivity of detection. Combined utilization of liquid chromatographic separation and multiple reaction monitoring-mass spectrometry allows for simultaneous quantification of the substrate S1P and product (2E)-hexadecenal. Incorporation of (2E)- d5-hexadecenal as an internal standard improves detection accuracy and precision. A simple one-step derivatization procedure eliminates the need for further extractions. Limits of quantification for (2E)-hexadecenal and sphingosine-1-phosphate are 100 and 50fmol, respectively. The assay displays a wide dynamic detection range useful for detection of low basal sphingosine phosphate lyase activity in wild type cells, SPL-overexpressing cell lines, and wild type mouse tissues. Compared to current methods, the capacity for simultaneous detection of sphingosine-1-phosphate and (2E)-hexadecenal greatly improves the accuracy of results and shows excellent sensitivity and specificity for sphingosine phosphate lyase activity detection.

Indexed as

Aldehyde-LyasesAnimalsCell LineEnzyme AssaysHydrazonesIndicator Dilution TechniquesIsotopesMiceMice, Inbred C57BLMice, KnockoutMolecular StructureAldehyde-LyasesHydrazonesIsotopessphingosine 1-phosphate lyase (aldolase)(2E)-Hexadecenal2-HydrazinoquinolineSphingolipidsSphingosine-1-phophatesphingosine phosphate lyaseSphingosine phosphate lyase

Identifiers

PMID26408264
PMCPMC4718852
OpenAlexW1866363063

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.