Evidence map›Paper›PMID 26528622›Full record

ArticleJournal of evolutionary biology2016

Comparative genomic study of arachnid immune systems indicates loss of beta-1,3-glucanase-related proteins and the immune deficiency pathway.

J Bechsgaard, B Vanthournout, P Funch, S Vestbo, R A Gibbs, S Richards, K W Sanggaard, J J Enghild, T Bilde

Open access · goldAbstract read
In one paragraph

Article in Journal of evolutionary biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. Advances in the use of entomopathogenic fungi to control ixodid ticks.Revista brasileira de parasitologia veterinaria = Brazilian journal of veterinary parasitology : Orgao Oficial do Colegio Brasileiro de Parasitologia Veterinaria · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Croquemort elicits activation of the immune deficiency pathway in ticks.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. Article
  13. Article
  14. Identification of microRNAs in the Lyme Disease VectorInternational journal of molecular sciences · 2022
    Article
  15. Review
  16. Article
  17. Ticks: More Than Just a Pathogen Delivery Service.Frontiers in cellular and infection microbiology · 2021
    Article
  18. Interactions between Borrelia burgdorferi and ticks.Nature reviews. Microbiology · 2020
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

J BechsgaardDepartment of Bioscience, Aarhus University, Aarhus C, Denmark.
B VanthournoutDepartment of Bioscience, Aarhus University, Aarhus C, Denmark.
P FunchDepartment of Bioscience, Aarhus University, Aarhus C, Denmark.
S VestboDepartment of Bioscience, Aarhus University, Aarhus C, Denmark.
R A GibbsDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
S RichardsDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
K W SanggaardDepartment of Molecular Biology and Genetics, Aarhus University, Aarhus C, Denmark.
J J EnghildDepartment of Molecular Biology and Genetics, Aarhus University, Aarhus C, Denmark.
T BildeDepartment of Bioscience, Aarhus University, Aarhus C, Denmark.
Aarhus University · DKBaylor College of Medicine · US

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
European Research Council 282163NHGRI NIH HHS U54 HG003273
6 · The paper itself

Abstract

Analyses of arthropod genomes have shown that the genes in the different innate humoral immune responses are conserved. These genes encode proteins that are involved in immune signalling pathways that recognize pathogens and activate immune responses. These immune responses include phagocytosis, encapsulation of the pathogen and production of effector molecules for pathogen elimination. So far, most studies have focused on insects leaving other major arthropod groups largely unexplored. Here, we annotate the immune-related genes of six arachnid genomes and present evidence for a conserved pattern of some immune genes, but also evolutionary changes in the arachnid immune system. Specifically, our results suggest that the family of recognition molecules of beta-1,3-glucanase-related proteins (βGRPs) and the genes from the immune deficiency (IMD) signalling pathway have been lost in a common ancestor of arachnids. These findings are consistent with previous work suggesting that the humoral immune effector proteins are constitutively produced in arachnids in contrast to insects, where these have to be induced. Further functional studies are needed to verify this. We further show that the full haemolymph clotting cascade found in the horseshoe crab is retrieved in most arachnid genomes. Tetranychus lacks at least one major component, although it is possible that this cascade could still function through recruitment of a different protein. The gel-forming protein in horseshoe crabs, coagulogen, was not recovered in any of the arachnid genomes; however, it is possible that the arachnid clot consists of a related protein, spätzle, that is present in all of the genomes.

Indexed as

Amino Acid SequenceAnimalsAntimicrobial Cationic PeptidesArachnidaBlood ProteinsDefensinsGene DosageGenomeGenomicsHemolymphImmune SystemImmunity, InnateProtein DomainsSequence AlignmentSignal TransductionAntimicrobial Cationic PeptidesBlood ProteinscoagulogenDefensinsArachnidacoagulationgenomicsimmunitysignalling pathway

Identifiers

PMID26528622
PMCPMC4744526
OpenAlexW2264944121

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.