Evidence map›Paper›PMID 26586757›Full record

ArticleScience (New York, N.Y.)2015

Stable recombination hotspots in birds.

Sonal Singhal, Ellen M Leffler, Keerthi Sannareddy, Isaac Turner, Oliver Venn, Daniel M Hooper, Alva I Strand, Qiye Li, Brian Raney, Christopher N Balakrishnan and 3 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 193 papers.

0numbers the graph read from it
0cells of the map it votes in
193citing papers in PubMed
32.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

193 citing papers in PubMed, 386 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. On the origin of PRDM9-guided recombination hotspots.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  8. Ultrarapid MC1R protein and associated plumage color evolution in the domestic chicken.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  9. Article
  10. Article
  11. Review
  12. Why recombination hotspots?PLoS genetics · 2026
    Review
  13. Article
  14. Article
  15. Meiotic Recombination in Teleosts.Advances in experimental medicine and biology · 2026
    Review
  16. Fine-scale recombination rates inferred using the canFam4 assembly are strongly correlated with previous maps of dog recombination.Mammalian genome : official journal of the International Mammalian Genome Society · 2025
    Article
  17. Review
  18. Article
  19. Article
  20. Article

133 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 4 countries.

Sonal SinghalDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA. Department of Systems Biology, Columbia University, New York, NY 10032, USA. sonal.singhal1@gmail.com molly.przew@gmail.com.
Ellen M LefflerDepartment of Human Genetics, University of Chicago, Chicago, IL 60637, USA. Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.
Keerthi SannareddyDepartment of Human Genetics, University of Chicago, Chicago, IL 60637, USA.
Isaac TurnerWellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.
Oliver VennWellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.
Daniel M HooperCommittee on Evolutionary Biology, University of Chicago, Chicago, IL 60637, USA.
Alva I StrandDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Qiye LiChina National Genebank, BGI-Shenzhen, Shenzhen 518083, China.
Brian RaneyCenter for Biomolecular Science and Engineering, University of California-Santa Cruz, Santa Cruz, CA 95064, USA.
Christopher N BalakrishnanDepartment of Biology, East Carolina University, Greenville, NC 27858, USA.
Simon C GriffithDepartment of Biological Sciences, Macquarie University, Sydney, NSW 2109, Australia.
Gil McVeanWellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.
Molly PrzeworskiDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA. Department of Systems Biology, Columbia University, New York, NY 10032, USA. sonal.singhal1@gmail.com molly.przew@gmail.com.
University of Oxford · GBColumbia University · USUniversity of Chicago · USChina National GeneBank · CNEast Carolina University · USMacquarie University · AU

Funding

CELLULAR AND MOLECULAR FOUNDATIONS OF BIOMEDICAL SCIENCET32GM008798 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PRYWES, RON M · 2001 to 2018
$6.3M
Recombination rate variation and evolution in vertebratesR01GM083098 · NIGMS · UNIVERSITY OF CHICAGO · PI PRZEWORSKI, MOLLY F · 2007 to 2024
$4.6M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM083098NIGMS NIH HHS T32 GM008798Wellcome Trust 086786Wellcome Trust 086786/Z/08/ZWellcome Trust 090532Wellcome Trust 090532/Z/09/ZWellcome Trust 100956
6 · The paper itself

Abstract

The DNA-binding protein PRDM9 has a critical role in specifying meiotic recombination hotspots in mice and apes, but it appears to be absent from other vertebrate species, including birds. To study the evolution and determinants of recombination in species lacking the gene that encodes PRDM9, we inferred fine-scale genetic maps from population resequencing data for two bird species: the zebra finch, Taeniopygia guttata, and the long-tailed finch, Poephila acuticauda. We found that both species have recombination hotspots, which are enriched near functional genomic elements. Unlike in mice and apes, most hotspots are shared between the two species, and their conservation seems to extend over tens of millions of years. These observations suggest that in the absence of PRDM9, recombination targets functional features that both enable access to the genome and constrain its evolution.

Indexed as

Evolution, MolecularGene Expression RegulationRecombination, GeneticAnimalsChromosome MappingFinchesGenomeRepressor ProteinsSpecies SpecificityRepressor Proteins

Identifiers

PMID26586757
PMCPMC4864528
OpenAlexW2175352995

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.