Evidence map›Paper›PMID 26769970›Full record

ArticleThe Journal of biological chemistry2016

Germ Cell Nuclear Factor (GCNF) Represses Oct4 Expression and Globally Modulates Gene Expression in Human Embryonic Stem (hES) Cells.

Hongran Wang, Xiaohong Wang, Xueping Xu, Michael Kyba, Austin J Cooney

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. OAC1 improves mitofusin 2 expression to alleviate neuronal injury following experimental ischemic stroke.The Korean journal of physiology & pharmacology : official journal of the Korean Physiological Society and the Korean Society of Pharmacology · 2025
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  5. The expanding roles of Nr6a1 in development and evolution.Frontiers in cell and developmental biology · 2024
    Review
  6. Review
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  9. Article
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  11. A Novel 13 bp Deletion within theAnimals : an open access journal from MDPI · 2019
    Article
  12. Article
  13. Targeted sequencing revealsInternational journal of clinical and experimental pathology · 2019
    Article
  14. Nuclear receptors in neural stem/progenitor cell homeostasis.Cellular and molecular life sciences : CMLS · 2017
    Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Hongran WangFrom the Department of Pediatrics, Dell Pediatric Research Institute, University of Texas at Austin Dell Medical School, Austin, Texas 78723.
Xiaohong WangStem Cell Center, Texas Heart Institute, Houston, Texas 77030, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas 77030, and.
Xueping XuDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas 77030, and.
Michael KybaDepartment of Pediatrics, Lillehei Heart Institute, University of Minnesota, Minneapolis, Minnesota 55454.
Austin J CooneyFrom the Department of Pediatrics, Dell Pediatric Research Institute, University of Texas at Austin Dell Medical School, Austin, Texas 78723, austin.cooney@austin.utexas.edu.
Baylor College of Medicine · USDell Children's Medical Center of Central Texas · USUniversity of Minnesota · US

Funding

The Role of p53 in Human Embryonic Stem CellsP01GM081627 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI GOODELL, MARGARET A. · 2007 to 2011
$9.9M
NIGMS NIH HHS P01 GM081627
6 · The paper itself

Abstract

Oct4 is considered a key transcription factor for pluripotent stem cell self-renewal. It binds to specific regions within target genes to regulate their expression and is downregulated upon induction of differentiation of pluripotent stem cells; however, the mechanisms that regulate the levels of human Oct4 expression remain poorly understood. Here we show that expression of human Oct4 is directly repressed by germ cell nuclear factor (GCNF), an orphan nuclear receptor, in hES cells. Knockdown of GCNF by siRNA resulted in maintenance of Oct4 expression during RA-induced hES cell differentiation. While overexpression of GCNF promoted repression of Oct4 expression in both undifferentiated and differentiated hES cells. The level of Oct4 repression was dependent on the level of GCNF expression in a dose-dependent manner. mRNA microarray analysis demonstrated that overexpression of GCNF globally regulates gene expression in undifferentiated and differentiated hES cells. Within the group of altered genes, GCNF down-regulated 36% of the genes, and up-regulated 64% in undifferentiated hES cells. In addition, GCNF also showed a regulatory gene pattern that is different from RA treatment during hES cell differentiation. These findings increase our understanding of the mechanisms that maintain hES cell pluripotency and regulate gene expression during the differentiation process.

Indexed as

Cell DifferentiationCell LineGene Expression RegulationHuman Embryonic Stem CellsHumansNuclear Receptor Subfamily 6, Group A, Member 1Octamer Transcription Factor-3Repressor ProteinsRNA, MessengerNR6A1 protein, humanNuclear Receptor Subfamily 6, Group A, Member 1Octamer Transcription Factor-3POU5F1 protein, humanRepressor ProteinsRNA, Messengercell differentiationembryonic stem cellgene expressiongene regulationGerm cell nuclear factorOct4pluripotency

Identifiers

PMID26769970
PMCPMC4861434
OpenAlexW2238431000

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.