Evidence map›Paper›PMID 26788539›Full record

ArticleMolecular genetics & genomic medicine2016

Hutterite-type cataract maps to chromosome 6p21.32-p21.31, cosegregates with a homozygous mutation in LEMD2, and is associated with sudden cardiac death.

Philip M Boone, Bo Yuan, Shen Gu, Zhiwei Ma, Tomasz Gambin, Claudia Gonzaga-Jauregui, Mahim Jain, Todd J Murdock, Janson J White, Shalini N Jhangiani and 8 more

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 32 citations in OpenAlex.

  1. Dilated Cardiomyopathy: A Genetic Journey from Past to Future.International journal of molecular sciences · 2024
    Review
  2. Through theGenes · 2024
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  3. Article
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  8. Understanding the molecular basis of cardiomyopathy.American journal of physiology. Heart and circulatory physiology · 2022
    Review
  9. The LEM-ESCRT toolkit: Repair and maintenance of the nucleus.Frontiers in cell and developmental biology · 2022
    Review
  10. Article
  11. The Diverse Cellular Functions of Inner Nuclear Membrane Proteins.Cold Spring Harbor perspectives in biology · 2021
    Review
  12. Review
  13. -Using themicroPublication biology · 2020
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 1 country.

Philip M BooneDepartment of Molecular and Human Genetics Baylor College of Medicine Houston Texas.ORCID 0000-0001-9528-252X
Bo YuanDepartment of Molecular and Human Genetics Baylor College of Medicine Houston Texas.
Shen GuDepartment of Molecular and Human Genetics Baylor College of Medicine Houston Texas.
Zhiwei MaOphthalmic Genetics and Visual Function Branch National Eye Institute Rockville Maryland.
Tomasz GambinDepartment of Molecular and Human Genetics Baylor College of Medicine Houston Texas.
Claudia Gonzaga-JaureguiDepartment of Molecular and Human Genetics Baylor College of Medicine Houston Texas.
Mahim JainDepartment of Molecular and Human Genetics Baylor College of Medicine Houston Texas.
Todd J MurdockRocky Mountain Eye Center Missoula Montana.
Janson J WhiteDepartment of Molecular and Human Genetics Baylor College of Medicine Houston Texas.
Shalini N JhangianiHuman Genome Sequencing Center Baylor College of Medicine Houston Texas.
Kimberly WalkerHuman Genome Sequencing Center Baylor College of Medicine Houston Texas.
Qiaoyan WangHuman Genome Sequencing Center Baylor College of Medicine Houston Texas.
Donna M MuznyHuman Genome Sequencing Center Baylor College of Medicine Houston Texas.
Richard A GibbsDepartment of Molecular and Human GeneticsBaylor College of MedicineHoustonTexas; Human Genome Sequencing CenterBaylor College of MedicineHoustonTexas.
J Fielding HejtmancikOphthalmic Genetics and Visual Function Branch National Eye Institute Rockville Maryland.
James R LupskiDepartment of Molecular and Human GeneticsBaylor College of MedicineHoustonTexas; Human Genome Sequencing CenterBaylor College of MedicineHoustonTexas; Department of PediatricsBaylor College of MedicineHoustonTexas; Texas Children's HospitalHoustonTexas.
Jennifer E PoseyDepartment of Molecular and Human Genetics Baylor College of Medicine Houston Texas.
Richard A LewisDepartment of Molecular and Human GeneticsBaylor College of MedicineHoustonTexas; Department of PediatricsBaylor College of MedicineHoustonTexas; Texas Children's HospitalHoustonTexas; Department of OphthalmologyBaylor College of MedicineHoustonTexas; Department of MedicineBaylor College of MedicineHoustonTexas.
Baylor College of Medicine · USNational Eye Institute · USRocky Mountain Research (United States) · US

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
Clinical/molecular Studies In Families With Congenital Or Hereditary CataractsZIAEY000281 · NEI · NATIONAL EYE INSTITUTE · PI HEJTMANCIK, JAMES F. · 2009 to 2025
$18.1M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007330 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI PLON, SHARON E. · 1985 to 2019
$15.6M
Baylor-Johns Hopkins Center for Mendelian GeneticsU54HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2012 to 2015
$15.6M
PROGRAM IN HUMAN MOLECULAR GENETICST32GM008307 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI SHAULSKY, GAD · 1990 to 2020
$6.6M
MOLECULAR GENETICS EMPHASIZING VISION RESEARCHT32EY007102 · NEI · BAYLOR COLLEGE OF MEDICINE · PI MARDON, GRAEME · 1988 to 2019
$3.8M
NEI NIH HHS T32 EY007102NHGRI NIH HHS U54 HG003273NHGRI NIH HHS U54 HG006542NIGMS NIH HHS T32 GM007330NIGMS NIH HHS T32 GM008307
6 · The paper itself

Abstract

backgroundJuvenile-onset cataracts are known among the Hutterites of North America. Despite being identified over 30 years ago, this autosomal recessive condition has not been mapped, and the disease gene is unknown.

methodsWe performed whole exome sequencing of three Hutterite-type cataract trios and follow-up genotyping and mapping in four extended kindreds.

resultsTrio exomes enabled genome-wide autozygosity mapping, which localized the disease gene to a 9.5-Mb region on chromosome 6p. This region contained two candidate variants, LEMD2 c.T38G and MUC21 c.665delC. Extended pedigrees recruited for variant genotyping revealed multiple additional relatives with juvenile-onset cataract, as well as six deceased relatives with both cataracts and sudden cardiac death. The candidate variants were genotyped in 84 family members, including 17 with cataracts; only the variant in LEMD2 cosegregated with cataracts (LOD = 9.62). SNP-based fine mapping within the 9.5 Mb linked region supported this finding by refining the cataract locus to a 0.5- to 2.9-Mb subregion (6p21.32-p21.31) containing LEMD2 but not MUC21. LEMD2 is expressed in mouse and human lenses and encodes a LEM domain-containing protein; the c.T38G missense mutation is predicted to mutate a highly conserved residue within this domain (p.Leu13Arg).

conclusionWe performed a genetic and genomic study of Hutterite-type cataract and found evidence for an association of this phenotype with sudden cardiac death. Using combined genetic and genomic approaches, we mapped cataracts to a small portion of chromosome 6 and propose that they result from a homozygous missense mutation in LEMD2.

Indexed as

CataractHutteriteLEMD2LEM domainMUC21recessivesudden death

Identifiers

PMID26788539
PMCPMC4707028
OpenAlexW2249594504

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.