Evidence map›Paper›PMID 26908599›Full record

ArticleHuman molecular genetics2016

Allelic series of Huntington's disease knock-in mice reveals expression discorrelates.

Ashish Kumar, Jennifer Zhang, Sara Tallaksen-Greene, Michael R Crowley, David K Crossman, A Jennifer Morton, Thomas Van Groen, Inga Kadish, Roger L Albin, Mathieu Lesort and 1 more

Abstract read
In one paragraph

Article in Human molecular genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. HSF1 and Its Role in Huntington's Disease Pathology.Advances in experimental medicine and biology · 2023
    Review
  3. Modelling the Human Blood-Brain Barrier in Huntington Disease.International journal of molecular sciences · 2022
    Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Cell-Specific Deletion of PGC-1α from Medium Spiny Neurons Causes Transcriptional Alterations and Age-Related Motor Impairment.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2018
    Article
  10. Progress in developing transgenic monkey model for Huntington's disease.Journal of neural transmission (Vienna, Austria : 1996) · 2018
    Review
  11. Article
  12. Reduced Expression of Foxp1 as a Contributing Factor in Huntington's Disease.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2017
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Ashish KumarDepartment of Cell, Developmental and Integrative Biology.
Jennifer ZhangDepartment of Biochemistry and Molecular Genetics.
Sara Tallaksen-GreeneVAAAHS GRECC, Ann Arbor, MI, USA and Department of Neurology, University of Michigan, Ann Arbor, MI, USA.
Michael R CrowleyDepartment of Genetics, and.
David K CrossmanDepartment of Genetics, and.
A Jennifer MortonDepartment of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK.
Thomas Van GroenDepartment of Cell, Developmental and Integrative Biology.
Inga KadishDepartment of Cell, Developmental and Integrative Biology.
Roger L AlbinVAAAHS GRECC, Ann Arbor, MI, USA and Department of Neurology, University of Michigan, Ann Arbor, MI, USA.
Mathieu LesortDepartment of Psychiatry, University of Alabama at Birmingham, Birmingham, AL, USA.
Peter J DetloffDepartment of Biochemistry and Molecular Genetics, detloff@uab.edu.

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Omer Jamy · 1985 to 2026
$165.9M
Virology CoreP30AI027767 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Paul A. Goepfert · 1988 to 2026
$84.1M
UAB Neuroscience Core CenterP30NS047466 · NINDS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI BRITT, WILLIAM JARVIS · 2005 to 2019
$8.5M
Methods to reduce HD gene expressionR21NS062216 · NINDS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DETLOFF, PETER J · 2008 to 2009
$349k
Neurodegeneration in Aging Retarded MiceR21NS059537 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ALBIN, ROGER L · 2008 to 2009
$292k
NCI NIH HHS CA13148NIAID NIH HHS CFAR AI027767NINDS NIH HHS NS059537NINDS NIH HHS NS062216NINDS NIH HHS NS071168NINDS NIH HHS P30 NS047466NINDS NIH HHS P30 NS47466
6 · The paper itself

Abstract

Identifying molecular drivers of pathology provides potential therapeutic targets. Differentiating between drivers and coincidental molecular alterations presents a major challenge. Variation unrelated to pathology further complicates transcriptomic, proteomic and metabolomic studies which measure large numbers of individual molecules. To overcome these challenges towards the goal of determining drivers of Huntington's disease (HD), we generated an allelic series of HD knock-in mice with graded levels of phenotypic severity for comparison with molecular alterations. RNA-sequencing analysis of this series reveals high numbers of transcripts with level alterations that do not correlate with phenotypic severity. These discorrelated molecular changes are unlikely to be drivers of pathology allowing an exclusion-based strategy to provide a short list of driver candidates. Further analysis of the data shows that a majority of transcript level changes in HD knock-in mice involve alteration of the rate of mRNA processing and/or degradation rather than solely being due to alteration of transcription rate. The overall strategy described can be applied to assess the influence of any molecular change on pathology for diseases where different mutations cause graded phenotypic severity.

Indexed as

Gene Expression RegulationAllelesAnimalsDisease Models, AnimalGene Knock-In TechniquesHumansHuntington DiseaseMicePhenotypeRNA, MessengerSequence Analysis, RNARNA, Messenger

Identifiers

PMID26908599
PMCPMC4805312

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.