Evidence map›Paper›PMID 27005442›Full record

ArticleEuropean journal of immunology2016

CD5 expression is regulated during human T-cell activation by alternative polyadenylation, PTBP1, and miR-204.

Rita G Domingues, Inês Lago-Baldaia, Isabel Pereira-Castro, Joseph M Fachini, Liliana Oliveira, Danica Drpic, Nair Lopes, Telmo Henriques, Joel R Neilson, Alexandre M Carmo and 1 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in European journal of immunology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it, 43 citations in OpenAlex.

  1. Pooled it
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  5. Article
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  12. A Bright Horizon: Immunotherapy for Pediatric T-Cell Malignancies.International journal of molecular sciences · 2022
    Review
  13. Article
  14. Article
  15. Article
  16. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Rita G DominguesGene Regulation Group, IBMC - Instituto de Biologia Molecular e Celular, Universidade do Porto, Portugal.
Inês Lago-BaldaiaGene Regulation Group, IBMC - Instituto de Biologia Molecular e Celular, Universidade do Porto, Portugal.
Isabel Pereira-CastroGene Regulation Group, IBMC - Instituto de Biologia Molecular e Celular, Universidade do Porto, Portugal.
Joseph M FachiniDepartment of Molecular Physiology and Biophysics, Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, TX, USA.
Liliana OliveiraInstituto de Investigação e Inovação em Saúde, Universidade do Porto, Portugal.
Danica DrpicGene Regulation Group, IBMC - Instituto de Biologia Molecular e Celular, Universidade do Porto, Portugal.
Nair LopesGene Regulation Group, IBMC - Instituto de Biologia Molecular e Celular, Universidade do Porto, Portugal.
Telmo HenriquesGene Regulation Group, IBMC - Instituto de Biologia Molecular e Celular, Universidade do Porto, Portugal.
Joel R NeilsonDepartment of Molecular Physiology and Biophysics, Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, TX, USA.
Alexandre M CarmoInstituto de Investigação e Inovação em Saúde, Universidade do Porto, Portugal.
Alexandra MoreiraGene Regulation Group, IBMC - Instituto de Biologia Molecular e Celular, Universidade do Porto, Portugal.
Universidade do Porto · PTi3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto · PTBaylor College of Medicine · USChildren's Cancer Center · US

Funding

Translational control of EMT by the CELF1 RNA Binding ProteinR01CA190467 · NCI · BAYLOR COLLEGE OF MEDICINE · PI NEILSON, JOEL R · 2015 to 2021
$1.9M
Prospective Identification of Translational Regulators in EMTR21CA185769 · NCI · BAYLOR COLLEGE OF MEDICINE · PI NEILSON, JOEL R · 2015 to 2016
$379k
NCI NIH HHS R01 CA190467NCI NIH HHS R21 CA185769
6 · The paper itself

Abstract

T lymphocytes stimulated through their antigen receptor (TCR) preferentially express mRNA isoforms with shorter 3´ untranslated regions (3´-UTRs) derived from alternative pre-mRNA cleavage and polyadenylation (APA). However, the physiological relevance of APA programs remains poorly understood. CD5 is a T-cell surface glycoprotein that negatively regulates TCR signaling from the onset of T-cell activation. CD5 plays a pivotal role in mediating outcomes of cell survival or apoptosis, and may prevent both autoimmunity and cancer. In human primary T lymphocytes and Jurkat cells we found three distinct mRNA isoforms encoding CD5, each derived from distinct poly(A) signals (PASs). Upon T-cell activation, there is an overall increase in CD5 mRNAs with a specific increase in the relative expression of the shorter isoforms. 3´-UTRs derived from these shorter isoforms confer higher reporter expression in activated T cells relative to the longer isoform. We further show that polypyrimidine tract binding protein (PTB/PTBP1) directly binds to the proximal PAS and PTB siRNA depletion causes a decrease in mRNA derived from this PAS, suggesting an effect on stability or poly(A) site selection to circumvent targeting of the longer CD5 mRNA isoform by miR-204. These mechanisms fine-tune CD5 expression levels and thus ultimately T-cell responses.

Indexed as

Polyadenylation3' Untranslated RegionsBase SequenceCD5 AntigensGene Expression RegulationHeterogeneous-Nuclear RibonucleoproteinsHumansJurkat CellsLymphocyte ActivationMicroRNAsModels, BiologicalPoly APolypyrimidine Tract-Binding ProteinRNA InterferenceRNA IsoformsRNA, Messenger3' Untranslated RegionsCD5 AntigensHeterogeneous-Nuclear RibonucleoproteinsMicroRNAsMIRN204 microRNA, humanPoly APolypyrimidine Tract-Binding ProteinPTBP1 protein, humanRNA IsoformsRNA, MessengerCD5 ⋅ Alternative polyadenylation ⋅ PTB/PTBP1 ⋅ miR-204 ⋅ T-lymphocyte activation

Identifiers

PMID27005442
PMCPMC5555168
OpenAlexW2302783143

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.