Evidence map›Paper›PMID 27056331›Full record

ArticleThe Journal of biological chemistry2016

Mapping of the Allosteric Site in Cholesterol Hydroxylase CYP46A1 for Efavirenz, a Drug That Stimulates Enzyme Activity.

Kyle W Anderson, Natalia Mast, Jeffrey W Hudgens, Joseph B Lin, Illarion V Turko, Irina A Pikuleva

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 54 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Kyle W AndersonFrom the Biomolecular Measurement Division, National Institute of Standards and Technology, Gaithersburg, Maryland 20899, the Institute for Bioscience and Biotechnology Research, Rockville, Maryland 20850, and.
Natalia Mastthe Department of Ophthalmology and Visual Sciences, Case Western Reserve University, Cleveland, Ohio 44106.
Jeffrey W HudgensFrom the Biomolecular Measurement Division, National Institute of Standards and Technology, Gaithersburg, Maryland 20899, the Institute for Bioscience and Biotechnology Research, Rockville, Maryland 20850, and.
Joseph B Linthe Department of Ophthalmology and Visual Sciences, Case Western Reserve University, Cleveland, Ohio 44106.
Illarion V TurkoFrom the Biomolecular Measurement Division, National Institute of Standards and Technology, Gaithersburg, Maryland 20899, the Institute for Bioscience and Biotechnology Research, Rockville, Maryland 20850, and.
Irina A Pikulevathe Department of Ophthalmology and Visual Sciences, Case Western Reserve University, Cleveland, Ohio 44106 iap8@case.edu.
Case Western Reserve University · USNational Institute of Standards and Technology · USMaterial Measurement Laboratory · US

Funding

Structure and function of cholesterol metabolizing P450sR01GM062882 · NIGMS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI PIKULEVA, IRINA A · 2001 to 2019
$5.5M
NIGMS NIH HHS R01 GM062882
6 · The paper itself

Abstract

Cytochrome P450 46A1 (CYP46A1) is a microsomal enzyme and cholesterol 24-hydroxylase that controls cholesterol elimination from the brain. This P450 is also a potential target for Alzheimer disease because it can be activated pharmacologically by some marketed drugs, as exemplified by efavirenz, the anti-HIV medication. Previously, we suggested that pharmaceuticals activate CYP46A1 allosterically through binding to a site on the cytosolic protein surface, which is different from the enzyme active site facing the membrane. Here we identified this allosteric site for efavirenz on CYP46A1 by using a combination of hydrogen-deuterium exchange coupled to MS, computational modeling, site-directed mutagenesis, and analysis of the CYP46A1 crystal structure. We also mapped the binding region for the CYP46A1 redox partner oxidoreductase and found that the allosteric and redox partner binding sites share a common border. On the basis of the data obtained, we propose the mechanism of CYP46A1 allostery and the pathway for the signal transmission from the P450 allosteric site to the active site.

Indexed as

AlkynesAllosteric SiteAmino Acid SequenceBenzoxazinesBinding SitesCatalytic DomainCholesterolCholesterol 24-HydroxylaseCrystallography, X-RayCyclopropanesHumansMolecular Sequence DataMutagenesis, Site-DirectedMutationProtein BindingProtein ConformationAlkynesBenzoxazinesCholesterolCholesterol 24-HydroxylaseCyclopropanesefavirenzReverse Transcriptase Inhibitorsallosteric regulationAlzheimer diseasebraincholesterolcholesterol metabolismcytochrome P450drug designhydrogen-deuterium exchange

Identifiers

PMID27056331
PMCPMC4882454
OpenAlexW2397242718

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.