ArticleScientific reports2016
Population transcriptomics uncovers the regulation of gene expression variation in adaptation to changing environment.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- Genomic insights into endangerment and conservation of Euryodendron excelsum, a critically endangered plant.BMC plant biology · 2026Article
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- Evolution of weedy giant ragweed (Ecology and evolution · 2022Article
- Environmental factors have a major effect in shaping the gene expression of Siberian larch in the Altai Mountains of China.The plant genome · 2022Article
- Transcriptomic Characterization ofPlants (Basel, Switzerland) · 2022Article
- Neighborhood Exposures and Blood Pressure Outcomes: A Cross-Sectional Environmental Study among 19-53 Years-Old Parsis in Mumbai.International journal of environmental research and public health · 2021Article
- Comparative transcriptome analysis and identification of candidate adaptive evolution genes ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Signatures of optimal codon usage in metabolic genes inform budding yeast ecology.PLoS biology · 2021Article
- Transcriptomic divergence between upland and lowland ecotypes contributes to rice adaptation to a drought-prone agroecosystem.Evolutionary applications · 2020Article
- Comparative transcriptomics of an arctic foundation species, tussock cottongrass (Eriophorum vaginatum), during an extreme heat event.Scientific reports · 2020Article
- Paf1c defects challenge the robustness of flower meristem termination inDevelopment (Cambridge, England) · 2019Article
- Utilization of Tissue Ploidy Level Variation inG3 (Bethesda, Md.) · 2019Article
- Selection of suitable reference genes for quantitive real-time PCR normalization in Miscanthus lutarioriparia.Molecular biology reports · 2019Article
- Coexpression network revealing the plasticity and robustness of population transcriptome during the initial stage of domesticating energy crop Miscanthus lutarioriparius.Plant molecular biology · 2018Article
- Transcriptome analysis of genes involved in secondary cell wall biosynthesis in developing internodes of Miscanthus lutarioriparius.Scientific reports · 2017Article
- Systematic comparison of lncRNAs with protein coding mRNAs in population expression and their response to environmental change.BMC plant biology · 2017Article
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8 authors.
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Abstract
Expression variation plays an important role in plant adaptation, but little is known about the factors impacting the expression variation when population adapts to changing environment. We used RNA-seq data from 80 individuals in 14 Miscanthus lutarioriparius populations, which were transplanted into a harsh environment from native habitat, to investigate the expression level, expression diversity and genetic diversity for genes expressed in both environments. The expression level of genes with lower expression level or without SNP tended to be more changeable in new environment, which suggested highly expressed genes experienced stronger purifying selection than those at lower level. Low proportion of genes with population effect confirmed the weak population structure and frequent gene flow in these populations. Meanwhile, the number of genes with environment effect was the most frequent compared with that with population effect. Our results showed that environment and genetic diversity were the main factors determining gene expression variation in population. This study could facilitate understanding the mechanisms of global gene expression variation when plant population adapts to changing environment.
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