Evidence map›Paper›PMID 27198230›Full record

ArticleGenes & development2016

Evolution of a transcriptional regulator from a transmembrane nucleoporin.

Tobias M Franks, Chris Benner, Iñigo Narvaiza, Maria C N Marchetto, Janet M Young, Harmit S Malik, Fred H Gage, Martin W Hetzer

Erratum issuedOpen access · diamondAbstract read
In one paragraph

Article in Genes & development, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
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  4. Article
  5. Advances in the understanding of nuclear pore complexes in human diseases.Journal of cancer research and clinical oncology · 2024
    Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Review
  17. GNeuron · 2020
    Article
  18. Review
  19. Nucleoporins in cardiovascular disease.Journal of molecular and cellular cardiology · 2020
    Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Tobias M FranksLaboratory of Molecular and Cellular Biology, Salk Institute for Biological Studies, La Jolla, California 92037, USA;
Chris BennerLaboratory of Molecular and Cellular Biology, Salk Institute for Biological Studies, La Jolla, California 92037, USA;
Iñigo NarvaizaLaboratory of Genetics, Salk Institute for Biological Studies, La Jolla, California 92037, USA;
Maria C N MarchettoLaboratory of Genetics, Salk Institute for Biological Studies, La Jolla, California 92037, USA;
Janet M YoungBasic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA;
Harmit S MalikBasic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA; Howard Hughes Medical Institute, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA;
Fred H GageLaboratory of Genetics, Salk Institute for Biological Studies, La Jolla, California 92037, USA; Center for Academic Research and Training in Anthropogeny (CARTA), La Jolla, California 92093, USA.
Martin W HetzerLaboratory of Molecular and Cellular Biology, Salk Institute for Biological Studies, La Jolla, California 92037, USA;
Salk Institute for Biological Studies · USFred Hutch Cancer Center · US

Funding

Viral Vector Core (VVC)P30CA014195 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Alan Saghatelian · 1985 to 2026
$82.8M
Training CoreP50GM107632 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BOEKE, JEF D · 2013 to 2017
$10.0M
Genetic Conflict Shapes Centromeres and HeterochromatinR01GM074108 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI MALIK, HARMIT S. · 2005 to 2022
$6.1M
The role of long-lived proteins in the survival of nerve cellsR01NS096786 · NINDS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI HETZER, MARTIN W · 2015 to 2019
$3.6M
The role of the nucleoporin Nup98 in gene regulationR01GM098749 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI HETZER, MARTIN W · 2012 to 2015
$1.4M
FHCRC High-Performance Computing ClusterS10OD020069 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KOOPERBERG, CHARLES L · 2015 to 2015
$600k
NCI NIH HHS P30 CA014195NIGMS NIH HHS P50 GM107632NIGMS NIH HHS R01 GM074108NIGMS NIH HHS R01 GM098749NIH HHS S10 OD020069NINDS NIH HHS R01 NS096786
6 · The paper itself

Abstract

Nuclear pore complexes (NPCs) emerged as nuclear transport channels in eukaryotic cells ∼1.5 billion years ago. While the primary role of NPCs is to regulate nucleo-cytoplasmic transport, recent research suggests that certain NPC proteins have additionally acquired the role of affecting gene expression at the nuclear periphery and in the nucleoplasm in metazoans. Here we identify a widely expressed variant of the transmembrane nucleoporin (Nup) Pom121 (named sPom121, for "soluble Pom121") that arose by genomic rearrangement before the divergence of hominoids. sPom121 lacks the nuclear membrane-anchoring domain and thus does not localize to the NPC. Instead, sPom121 colocalizes and interacts with nucleoplasmic Nup98, a previously identified transcriptional regulator, at gene promoters to control transcription of its target genes in human cells. Interestingly, sPom121 transcripts appear independently in several mammalian species, suggesting convergent innovation of Nup-mediated transcription regulation during mammalian evolution. Our findings implicate alternate transcription initiation as a mechanism to increase the functional diversity of NPC components.

Indexed as

Evolution, MolecularGene Expression RegulationTranscription, Genetic5' Untranslated RegionsCell MembraneCell NucleusExonsHeLa CellsHumansMembrane GlycoproteinsMutant ProteinsNuclear Localization SignalsNuclear Pore Complex ProteinsNuclear ProteinsPromoter Regions, GeneticProtein Domains5' Untranslated RegionsMembrane GlycoproteinsMutant ProteinsNuclear Localization SignalsNuclear Pore Complex ProteinsNuclear ProteinsNUP107 protein, humanNUP160 protein, humanNup98 protein, humanPOM121 protein, humanProtein IsoformsTranscription Factorsevolutionhominoidnuclear pore complex (NPC)Nup98Pom121transcription

Identifiers

PMID27198230
PMCPMC4888837
OpenAlexW2401946066

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.