Evidence map›Paper›PMID 27245220›Full record

ArticleScientific reports2016

Phosphatidylinositol-3-phosphate is light-regulated and essential for survival in retinal rods.

Feng He, Melina A Agosto, Ivan A Anastassov, Dennis Y Tse, Samuel M Wu, Theodore G Wensel

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Ribosomal targeting strategy and nuclear labeling to analyze photoreceptor phosphoinositide signatures.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2022
    Article
  5. Review
  6. Article
  7. Class III PI3K Biology.Current topics in microbiology and immunology · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. PI3K inhibitors in thrombosis and cardiovascular disease.Clinical and translational medicine · 2020
    Review
  15. The Enigmatic Role of Lipids in Cilia Signaling.Frontiers in cell and developmental biology · 2020
    Review
  16. Transducin Partners Outside the Phototransduction Pathway.Frontiers in cellular neuroscience · 2020
    Article
  17. Article
  18. Autophagy inAutophagy · 2019
    Article
  19. PI3K isoforms in cell signalling and vesicle trafficking.Nature reviews. Molecular cell biology · 2019
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Feng HeVerna and Marrs McLean Department of Biochemistry and Molecular Biology , Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.
Melina A AgostoVerna and Marrs McLean Department of Biochemistry and Molecular Biology , Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.
Ivan A AnastassovVerna and Marrs McLean Department of Biochemistry and Molecular Biology , Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.
Dennis Y TseDepartment of Ophthalmology, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Samuel M WuDepartment of Ophthalmology, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Theodore G WenselVerna and Marrs McLean Department of Biochemistry and Molecular Biology , Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.
Baylor College of Medicine · USHong Kong Polytechnic University · HK

Funding

VISION RESEARCH CENTERP30EY002520 · NEI · BAYLOR COLLEGE OF MEDICINE · PI Samuel M Wu · 1985 to 2026
$14.8M
HOUSTON AREA MOLECULAR BIOPHYSICS TRAINING PROGRAMT32GM008280 · NIGMS · RICE UNIVERSITY · PI WENSEL, THEODORE G · 1988 to 2023
$8.0M
Trasnducin Interactions with Photoreceptor MembranesR01EY007981 · NEI · BAYLOR COLLEGE OF MEDICINE · PI WENSEL, THEODORE G · 1989 to 2016
$6.1M
PHYSIOLOGY AND PHARMACOLOGY OF SYNAPSES IN THE RETINAR01EY004446 · NEI · BAYLOR COLLEGE OF MEDICINE · PI WU, SAMUEL M · 1985 to 2014
$5.4M
ROD AND CONE SIGNALING PATHWAYS IN MAMMALIAN RETINAR01EY019908 · NEI · BAYLOR COLLEGE OF MEDICINE · PI WU, SAMUEL M · 2010 to 2020
$3.8M
Light regulation of retinal phosphoinositidesR01EY025218 · NEI · BAYLOR COLLEGE OF MEDICINE · PI WENSEL, THEODORE G · 2016 to 2019
$1.6M
Characterization of TRPM1 isoforms and binding partners in ON bipolar cellsF32EY024815 · NEI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ANASTASSOV, IVAN · 2014 to 2016
$164k
NEI NIH HHS F32 EY024815NEI NIH HHS P30 EY002520NEI NIH HHS R01 EY004446NEI NIH HHS R01 EY007981NEI NIH HHS R01 EY019908NEI NIH HHS R01 EY025218NIGMS NIH HHS T32 GM008280
6 · The paper itself

Abstract

Phosphoinositides play important roles in numerous intracellular membrane pathways. Little is known about the regulation or function of these lipids in rod photoreceptor cells, which have highly active membrane dynamics. Using new assays with femtomole sensitivity, we determined that whereas levels of phosphatidylinositol-3,4-bisphosphate and phosphatidylinositol-3,4,5-trisphosphate were below detection limits, phosphatidylinositol-3-phosphate (PI(3)P) levels in rod inner/outer segments increased more than 30-fold after light exposure. This increase was blocked in a rod-specific knockout of the PI-3 kinase Vps34, resulting in failure of endosomal and autophagy-related membranes to fuse with lysosomes, and accumulation of abnormal membrane structures. At early ages, rods displayed normal morphology, rhodopsin trafficking, and light responses, but underwent progressive neurodegeneration with eventual loss of both rods and cones by twelve weeks. The degeneration is considerably faster than in rod knockouts of autophagy genes, indicating defects in endosome recycling or other PI(3)P-dependent membrane trafficking pathways are also essential for rod survival.

Indexed as

AnimalsAutophagyAutophagy-Related ProteinsCell SurvivalClass III Phosphatidylinositol 3-KinasesEndosomesGene Expression RegulationLightLight Signal TransductionLysosomesMembrane FusionMiceMice, Inbred C57BLMice, KnockoutPhosphatidylinositol PhosphatesRetinal Cone Photoreceptor CellsAutophagy-Related ProteinsClass III Phosphatidylinositol 3-Kinasesphosphatidylinositol 3-phosphatePhosphatidylinositol PhosphatesRhodopsin

Identifiers

PMID27245220
PMCPMC4887901
OpenAlexW2409187892

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.