Evidence map›Paper›PMID 27307257›Full record

ArticlePlant physiology2016

The Juvenile Phase of Maize Sees Upregulation of Stress-Response Genes and Is Extended by Exogenous Jasmonic Acid.

Benjamin Beydler, Krista Osadchuk, Chi-Lien Cheng, J Robert Manak, Erin E Irish

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
6.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 37 citations in OpenAlex.

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  13. Development and evolution of age-dependent defenses in ant-acacias.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  14. APETALA2 control of barley internode elongation.Development (Cambridge, England) · 2019
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Benjamin BeydlerDepartment of Biology, University of Iowa, Iowa City, Iowa 52242.ORCID 0000-0001-9499-0209
Krista OsadchukDepartment of Biology, University of Iowa, Iowa City, Iowa 52242.
Chi-Lien ChengDepartment of Biology, University of Iowa, Iowa City, Iowa 52242.ORCID 0000-0003-3188-047X
J Robert ManakDepartment of Biology, University of Iowa, Iowa City, Iowa 52242.
Erin E IrishDepartment of Biology, University of Iowa, Iowa City, Iowa 52242 erin-irish@uiowa.edu.ORCID 0000-0003-4244-7938
University of Iowa · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As maize (Zea mays) plants undergo vegetative phase change from juvenile to adult, they both exhibit heteroblasty, an abrupt change in patterns of leaf morphogenesis, and gain the ability to produce flowers. Both processes are under the control of microRNA156 (miR156), whose levels decline at the end of the juvenile phase. Gain of the ability to flower is conferred by the expression of miR156 targets that encode SQUAMOSA PROMOTER-BINDING transcription factors, which, when derepressed in the adult phase, induce the expression of MADS box transcription factors that promote maturation and flowering. How gene expression, including targets of those microRNAs, differs between the two phases remains an open question. Here, we compare transcript levels in primordia that will develop into juvenile or adult leaves to identify genes that define these two developmental states and may influence vegetative phase change. In comparisons among successive leaves at the same developmental stage, plastochron 6, three-fourths of approximately 1,100 differentially expressed genes were more highly expressed in primordia of juvenile leaves. This juvenile set was enriched in photosynthetic genes, particularly those associated with cyclic electron flow at photosystem I, and in genes involved in oxidative stress and retrograde redox signaling. Pathogen- and herbivory-responsive pathways including salicylic acid and jasmonic acid also were up-regulated in juvenile primordia; indeed, exogenous application of jasmonic acid delayed both the appearance of adult traits and the decline in the expression of miR156-encoding loci in maize seedlings. We hypothesize that the stresses associated with germination promote juvenile patterns of differentiation in maize.

Indexed as

Genes, PlantCluster AnalysisCyclopentanesGene Expression Regulation, PlantGene OntologyNucleotide MotifsOxylipinsPhloemPlant LeavesPromoter Regions, GeneticRNA, MessengerStress, PhysiologicalUp-RegulationZea maysCyclopentanesjasmonic acidOxylipinsRNA, Messenger

Identifiers

PMID27307257
PMCPMC4972259
OpenAlexW2426764998

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.