Evidence map›Paper›PMID 27312489›Full record

ArticleMethods in cell biology2016

Methods to study maternal regulation of germ cell specification in zebrafish.

O H Kaufman, F L Marlow

Open access · greenAbstract read
In one paragraph

Article in Methods in cell biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Primordial Germ Cell Development in the Poeciliid,Frontiers in cell and developmental biology · 2022
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

O H KaufmanAlbert Einstein College of Medicine, Bronx, NY, United States.
F L MarlowAlbert Einstein College of Medicine, Bronx, NY, United States.
Albert Einstein College of Medicine · US

Funding

Oocyte polarity and mRNA localization in ZebrafishR01GM089979 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MARLOW, FLORENCE LOUISE · 2010 to 2018
$3.0M
The Role of Rbpms2 in establishing oocyte polarityF30HD082903 · NICHD · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI KAUFMAN, ODELYA HARTUNG · 2015 to 2016
$97k
NICHD NIH HHS F30 HD082903NIGMS NIH HHS R01 GM089979
6 · The paper itself

Abstract

The process by which the germ line is specified in the zebrafish embryo is under the control of maternal gene products that were produced during oogenesis. Zebrafish are highly amenable to microscopic observation of the processes governing maternal germ cell specification because early embryos are transparent, and the germ line is specified rapidly (within 4-5h post fertilization). Advantages of zebrafish over other models used to study vertebrate germ cell formation include their genetic tractability, the large numbers of progeny, and the easily manipulable genome, all of which make zebrafish an ideal system for studying the genetic regulators and cellular basis of germ cell formation and maintenance. Classical molecular biology techniques, including expression analysis through in situ hybridization and forward genetic screens, have laid the foundation for our understanding of germ cell development in zebrafish. In this chapter, we discuss some of these classic techniques, as well as recent cutting-edge methodologies that have improved our ability to visualize the process of germ cell specification and differentiation, and the tracking of specific molecules involved in these processes. Additionally, we discuss traditional and novel technologies for manipulating the zebrafish genome to identify new components through loss-of-function studies of putative germ cell regulators. Together with the numerous aforementioned advantages of zebrafish as a genetic model for studying development, we believe these new techniques will continue to advance zebrafish to the forefront for investigation of the molecular regulators of germ cell specification and germ line biology.

Indexed as

Cell BiologyAnimalsCell DifferentiationEmbryo, NonmammalianFertilizationGenomeGerm CellsOocytesOogenesisZebrafishCRISPR-Cas9Germ cellGerm lineGerm plasmMaternal effectMaternal specificationMorpholinoMS2RNAscopeZebrafish

Identifiers

PMID27312489
PMCPMC5039941
OpenAlexW2295960111

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.