Evidence map›Paper›PMID 27418588›Full record

ArticlePlant physiology2016

The 5'UTR Intron of Arabidopsis GGT1 Aminotransferase Enhances Promoter Activity by Recruiting RNA Polymerase II.

Miriam Laxa, Kristin Müller, Natalie Lange, Lennart Doering, Jan Thomas Pruscha, Christoph Peterhänsel

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 46 citations in OpenAlex.

  1. Proceedings of the National Academy of Sciences of the United States of America · 2026
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  7. Review
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  9. Genome-Wide Comparison and Functional Characterization ofInternational journal of molecular sciences · 2023
    Article
  10. Review
  11. Review
  12. Article
  13. Rosiglitazone Ameliorates Spinal Cord InjuryOxidative medicine and cellular longevity · 2022
    Article
  14. Article
  15. Review
  16. Article
  17. Genome-Wide Identification and Characterization of UTR-Introns ofInternational journal of molecular sciences · 2020
    Article
  18. Article
  19. The Rapid Methylation of T-DNAs UponFrontiers in plant science · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Miriam LaxaLeibniz University Hannover, Institute of Botany, 30419 Hannover, Germany m.laxa@botanik.uni-hannover.de.
Kristin MüllerLeibniz University Hannover, Institute of Botany, 30419 Hannover, Germany.
Natalie LangeLeibniz University Hannover, Institute of Botany, 30419 Hannover, Germany.
Lennart DoeringLeibniz University Hannover, Institute of Botany, 30419 Hannover, Germany.
Jan Thomas PruschaLeibniz University Hannover, Institute of Botany, 30419 Hannover, Germany.
Christoph PeterhänselLeibniz University Hannover, Institute of Botany, 30419 Hannover, Germany.
Leibniz University Hannover · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Photorespiration is essential for the detoxification of glycolate and recycling of carbon to the Calvin Benson Bassham cycle. Enzymes participating in the pathway have been identified, and investigations now focus on the regulation of photorespiration by transporters and metabolites. However, regulation of photorespiration on the gene level has not been intensively studied. Here, we show that maximum transcript abundance of Glu:glyoxylate aminotransferase 1 (GGT1) is regulated by intron-mediated enhancement (IME) of the 5' leader intron rather than by regulatory elements in the 5' upstream region. The intron is rich in CT-stretches and contains the motif TGTGATTTG that is highly similar to the IME-related motif TTNGATYTG. The GGT1 intron also confers leaf-specific expression of foreign promoters. Quantitative PCR analysis and GUS activity measurements revealed that IME of the GGT1 5'UTR intron is controlled on the transcriptional level. IME by the GGT1 5'UTR intron was at least 2-fold. Chromatin immunoprecipitation experiments showed that the abundance of RNA polymerase II binding to the intron-less construct is reduced.

Indexed as

Gene Expression Regulation, Plant5' Untranslated RegionsArabidopsisBase SequenceBinding SitesIntronsNucleotide MotifsPlant LeavesPlants, Genetically ModifiedPromoter Regions, GeneticProtein BindingReverse Transcriptase Polymerase Chain ReactionRNA Polymerase IISequence Homology, Nucleic AcidTransaminasesTranscription, Genetic5' Untranslated RegionsAt1g23310 protein, ArabidopsisRNA Polymerase IITransaminases

Identifiers

PMID27418588
PMCPMC5074633
OpenAlexW2468554831

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.