Evidence map›Paper›PMID 27793976›Full record

ArticleJournal of cell science2016

Vps34 regulates Rab7 and late endocytic trafficking through recruitment of the GTPase-activating protein Armus.

Nadia Jaber, Noor Mohd-Naim, Ziqing Wang, Jennifer L DeLeon, Seong Kim, Hua Zhong, Namratha Sheshadri, Zhixun Dou, Aimee L Edinger, Guangwei Du and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of cell science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 86 citations in OpenAlex.

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  18. Recent advances in targeting autophagy in cancer.Trends in pharmacological sciences · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Nadia JaberDepartment of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook NY11794, USA.
Noor Mohd-NaimMolecular Medicine, NHLI, Faculty of Medicine, Imperial College London, London SW7 2AZ, UK.
Ziqing WangDepartment of Integrative Biology and Pharmacology, University of Texas Health Science Center at Houston, Houston, TX 77030, USA.
Jennifer L DeLeonDepartment of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook NY11794, USA.
Seong KimDepartment of Developmental and Cell Biology, University of California, Irvine, CA 92697, USA.
Hua ZhongDepartment of Chemical Biology, Ernest Mario School of Pharmacy, Rutgers University, 164 Frelinghuysen Road, Piscataway NJ08854, USA.
Namratha SheshadriDepartment of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook NY11794, USA.
Zhixun DouDepartment of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook NY11794, USA.
Aimee L EdingerDepartment of Developmental and Cell Biology, University of California, Irvine, CA 92697, USA.
Guangwei DuDepartment of Integrative Biology and Pharmacology, University of Texas Health Science Center at Houston, Houston, TX 77030, USA.
Vania M M BragaMolecular Medicine, NHLI, Faculty of Medicine, Imperial College London, London SW7 2AZ, UK.
Wei-Xing ZongDepartment of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook NY11794, USA weixing.zong@pharmacy.rutgers.edu.ORCID 0000-0002-3129-8220
Stony Brook University · USImperial College London · GBRutgers, The State University of New Jersey · USThe University of Texas Health Science Center at Houston · USUniversity of California, Irvine · US

Funding

TRANSCRIPTIONAL PROFILINGP30CA072720 · NCI · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI Tracie Saunders · 1997 to 2026
$94.5M
Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Melanie Funes · 1994 to 2026
$57.9M
Protein and redox homeostasis in cancer development and therapyR01CA129536 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI ZONG, WEI-XING · 2008 to 2022
$4.8M
Phosphatidylinositol 3-kinases and AutophagyR01GM097355 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI ZONG, WEI-XING · 2012 to 2015
$1.5M
Phospholipase D2 regulation of vascular smooth muscle cell migrationR01HL119478 · NHLBI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI DU, GUANGWEI · 2014 to 2017
$1.5M
Effects of sphingolipids on nutrient transporter expression and bioenergeticsR01GM089919 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI EDINGER, AIMEE L · 2010 to 2014
$1.5M
Class III phosphoinositide 3-kinase Vps34 in autophagy and endocytosisF31CA177243 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI JABER, NADIA · 2013 to 2015
$81k
Medical Research Council MR/J007668/1NCI NIH HHS F31 CA177243NCI NIH HHS P30 CA062203NCI NIH HHS R01 CA129536NHLBI NIH HHS R01 HL119478NIGMS NIH HHS R01 GM089919NIGMS NIH HHS R01 GM097355
6 · The paper itself

Abstract

The class III phosphoinositide 3-kinase (PI3K) Vps34 (also known as PIK3C3 in mammals) produces phosphatidylinositol 3-phosphate [PI(3)P] on both early and late endosome membranes to control membrane dynamics. We used Vps34-deficient cells to delineate whether Vps34 has additional roles in endocytic trafficking. In Vps34

Indexed as

EndocytosisAnimalsAutophagyBiocatalysisClass III Phosphatidylinositol 3-KinasesEndosomesFibroblastsGTPase-Activating ProteinsHeLa CellsHumansLysosomesMice, KnockoutPhosphatidylinositol PhosphatesProtein Transportrab7 GTP-Binding Proteinsrab GTP-Binding ProteinsClass III Phosphatidylinositol 3-KinasesGTPase-Activating Proteinsphosphatidylinositol 3-phosphatePhosphatidylinositol Phosphatesrab7 GTP-Binding Proteinsrab7 GTP-binding proteins, humanrab7 GTP-binding proteins, mouserab GTP-Binding ProteinsTBC1D2 protein, mouseTOR Serine-Threonine KinasesArmusEndocytosisRab7Vps34

Identifiers

PMID27793976
PMCPMC5201010
OpenAlexW2544544117

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.