Evidence map›Paper›PMID 27798672›Full record

ArticlePloS one2016

DNA Methylation of PITX2 and PANCR Is Prognostic for Overall Survival in Patients with Resected Adenocarcinomas of the Biliary Tract.

Barbara Uhl, Dimo Dietrich, Vittorio Branchi, Alexander Semaan, Pauline Schaefer, Heidrun Gevensleben, Babak Rostamzadeh, Philipp Lingohr, Nico Schäfer, Jörg C Kalff and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Article
  5. Article
  6. Clinical epigenetics · 2017
    Article
  7. The Predictive Value ofDisease markers · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Barbara UhlInstitute of Pathology, University of Bonn, Bonn, Germany.
Dimo DietrichInstitute of Pathology, University of Bonn, Bonn, Germany.
Vittorio BranchiDepartment of Surgery, University of Bonn, Bonn, Germany.
Alexander SemaanDepartment of Surgery, University of Bonn, Bonn, Germany.
Pauline SchaeferDepartment of Surgery, University of Bonn, Bonn, Germany.
Heidrun GevenslebenInstitute of Pathology, University of Bonn, Bonn, Germany.
Babak RostamzadehDepartment of Neuroradiology, Katharinenhospital, Klinikum Stuttgart, Stuttgart, Germany.
Philipp LingohrDepartment of Surgery, University of Bonn, Bonn, Germany.
Nico SchäferDepartment of Surgery, University of Bonn, Bonn, Germany.
Jörg C KalffDepartment of Surgery, University of Bonn, Bonn, Germany.
Glen KristiansenInstitute of Pathology, University of Bonn, Bonn, Germany.
Hanno MatthaeiDepartment of Surgery, University of Bonn, Bonn, Germany.
University of Bonn · DEKlinikum Stuttgart · DEUniversity Hospital Bonn · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biliary tract cancers (BTC) are rare but highly aggressive malignant epithelial tumors. In order to improve the outcome in this lethal disease, novel biomarkers for diagnosis, prognosis, and therapy response prediction are urgently needed. DNA promoter methylation of PITX2 variants (PITX2ab, PITX2c) and intragenic methylation of the PITX2 adjacent non-coding RNA (PANCR) were investigated by methylations-specific qPCR assays in formalin-fixed paraffin-embedded tissue from 80 patients after resection for BTC. Results were correlated with clinicopathologic data and outcome. PITX2 variants and PANCR showed significant hypermethylation in tumor vs. normal adjacent tissue (p < 0.001 and p = 0.015), respectively. In survival analysis, dichotomized DNA methylation of variant PITX2c and PANCR were significantly associated with overall survival (OS). Patients with high tumor methylation levels of PITX2c had a shorter OS compared to patients with low methylation (12 vs. 40 months OS; HR 2.48 [1.38-4.48], p = 0.002). In contrast, PANCR hypermethylation was associated with prolonged survival (25 vs. 19 months OS; HR 0.54 [0.30-0.94], p = 0.015) and qualified as an independent prognostic factor on multivariate analysis. The biomarkers investigated in this study may help to identify BTC subpopulations at risk for worse survival. Further studies are needed to evaluate if PITX2 might be a clinically useful biomarker for an optimized and individualized treatment.

Indexed as

DNA MethylationAdenocarcinomaAdultAgedAged, 80 and overBiliary Tract NeoplasmsBiomarkers, TumorChromosomes, Human, Pair 4FemaleGenetic LociHomeobox Protein PITX2Homeodomain ProteinsHumansKaplan-Meier EstimateMaleMiddle AgedBiomarkers, TumorHomeobox Protein PITX2Homeodomain ProteinsRNA, UntranslatedTranscription Factors

Identifiers

PMID27798672
PMCPMC5087948
OpenAlexW2543006292

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.