Evidence map›Paper›PMID 27849592›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Duplication of chicken defensin7 gene generated by gene conversion and homologous recombination.

Mi Ok Lee, Susanne Bornelöv, Leif Andersson, Susan J Lamont, Junfeng Chen, James E Womack

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. β-Defensin gene copy number variation in cattle.Royal Society open science · 2024
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Mi Ok LeeDepartment of Veterinary Pathobiology, Texas A&M University, College Station, TX 77843.
Susanne BornelövScience for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
Leif AnderssonScience for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
Susan J LamontDepartment of Animal Science, Iowa State University, Ames, IA 55001.
Junfeng ChenDepartment of Veterinary Pathobiology, Texas A&M University, College Station, TX 77843.
James E WomackDepartment of Veterinary Pathobiology, Texas A&M University, College Station, TX 77843; jwomack@cvm.tamu.edu.
Science for Life Laboratory · SETexas A&M University · USIowa State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Defensins constitute an evolutionary conserved family of cationic antimicrobial peptides that play a key role in host innate immune responses to infection. Defensin genes generally reside in complex genomic regions that are prone to structural variation, and defensin genes exhibit extensive copy number variation in humans and in other species. Copy number variation of defensin genes was examined in inbred lines of Leghorn and Fayoumi chickens, and a duplication of defensin7 was discovered in the Fayoumi breed. Analysis of junction sequences confirmed the occurrence of a simple tandem duplication of defensin7 with sequence identity at the junction, suggesting nonallelic homologous recombination between defensin7 and defensin6 The duplication event generated two chimeric promoters that are best explained by gene conversion followed by homologous recombination. Expression of defensin7 was not elevated in animals with two genes despite both genes being transcribed in the tissues examined. Computational prediction of promoter regions revealed the presence of several putative transcription factor binding sites generated by the duplication event. These data provide insight into the evolution and possible function of large gene families and specifically, the defensins.

Indexed as

Evolution, MolecularAmino Acid SequenceAnimalsChickensComputational BiologyDefensinsDNA Copy Number VariationsGene ConversionGene DuplicationGene Expression RegulationGenomicsHomologous RecombinationSequence Homology, Amino AcidDefensinsantimicrobial peptideschickencopy number variationdefensinnonallelic homologous recombination

Identifiers

PMID27849592
PMCPMC5137700
OpenAlexW2556657377

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.