Evidence map›Paper›PMID 27892520›Full record

ArticleScientific reports2016

Internal epitope tagging informed by relative lack of sequence conservation.

Leonard Burg, Karen Zhang, Tristan Bonawitz, Viktorija Grajevskaja, Gianfranco Bellipanni, Richard Waring, Darius Balciunas

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Homology-Directed Repair in Zebrafish: Witchcraft and Wizardry?Frontiers in molecular biosciences · 2020
    Review
  12. Article
  13. Zebrafish knock-ins swim into the mainstream.Disease models & mechanisms · 2018
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Leonard BurgDepartment of Biology, College of Science and Technology, Temple University, Philadelphia, PA 19122, United States.
Karen ZhangDepartment of Biology, College of Science and Technology, Temple University, Philadelphia, PA 19122, United States.
Tristan BonawitzDepartment of Biology, College of Science and Technology, Temple University, Philadelphia, PA 19122, United States.
Viktorija GrajevskajaDepartment of Biology, College of Science and Technology, Temple University, Philadelphia, PA 19122, United States.
Gianfranco BellipanniDepartment of Biology, College of Science and Technology, Temple University, Philadelphia, PA 19122, United States.
Richard WaringDepartment of Biology, College of Science and Technology, Temple University, Philadelphia, PA 19122, United States.
Darius BalciunasDepartment of Biology, College of Science and Technology, Temple University, Philadelphia, PA 19122, United States.

Funding

Transposon-based Platform for Insertional Mutagenesis and Genome EngineeringR01HD061749 · NICHD · TEMPLE UNIV OF THE COMMONWEALTH · PI BALCIUNAS, DARIUS · 2010 to 2014
$1.5M
NICHD NIH HHS R01 HD061749
6 · The paper itself

Abstract

Many experimental techniques rely on specific recognition and stringent binding of proteins by antibodies. This can readily be achieved by introducing an epitope tag. We employed an approach that uses a relative lack of evolutionary conservation to inform epitope tag site selection, followed by integration of the tag-coding sequence into the endogenous locus in zebrafish. We demonstrate that an internal epitope tag is accessible for antibody binding, and that tagged proteins retain wild type function.

Indexed as

Amino Acid SequenceAnimalsAntibodiesConserved SequenceEpitopesProteinsSequence AlignmentZebrafishAntibodiesEpitopesProteins

Identifiers

PMID27892520
PMCPMC5125009

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.