Evidence map›Paper›PMID 28035050›Full record

ArticleMolecular biology of the cell2017

Chromatin association of XRCC5/6 in the absence of DNA damage depends on the XPE gene product DDB2.

Damiano Fantini, Shuo Huang, John M Asara, Srilata Bagchi, Pradip Raychaudhuri

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Damiano FantiniDepartment of Biochemistry and Molecular Genetics, College of Medicine, University of Illinois, Chicago, IL 60607.
Shuo HuangDepartment of Biochemistry and Molecular Genetics, College of Medicine, University of Illinois, Chicago, IL 60607.
John M AsaraDivision of Signal Transduction, Beth Israel Deaconess Medical Center, and Department of Medicine, Harvard Medical School, Boston, MA 02115.
Srilata BagchiDepartment of Oral Biology, College of Dentistry, University of Illinois, Chicago, IL 60612.
Pradip RaychaudhuriDepartment of Biochemistry and Molecular Genetics, College of Medicine, University of Illinois, Chicago, IL 60607 pradip@uic.edu.
University of Illinois Urbana-Champaign · USBeth Israel Deaconess Medical Center · USUniversity of Illinois Chicago · US

Funding

Role of DDB in Checkpoint Control and CarcinogenesisR01CA077637 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI RAYCHAUDHURI, PRADIP · 1999 to 2014
$3.6M
FoxM1 in liver cancer.R01CA175380 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI RAYCHAUDHURI, PRADIP · 2014 to 2018
$2.0M
DNA Damage Response and DDBR01CA156164 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI BAGCHI, SRILATA, RAYCHAUDHURI, PRADIP · 2010 to 2014
$1.6M
FoxM1 in tumor cellI01BX000131 · VA · JESSE BROWN VA MEDICAL CENTER · PI RAYCHAUDHURI, PRADIP · 2009 to 2025
–
BLRD VA I01 BX000131NCI NIH HHS R01 CA077637NCI NIH HHS R01 CA156164NCI NIH HHS R01 CA175380
6 · The paper itself

Abstract

Damaged DNA-binding protein 2 (DDB2), a nuclear protein, participates in both nucleotide excision repair and mRNA transcription. The transcriptional regulatory function of DDB2 is significant in colon cancer, as it regulates metastasis. To characterize the mechanism by which DDB2 participates in transcription, we investigated the protein partners in colon cancer cells. Here we show that DDB2 abundantly associates with XRCC5/6, not involving CUL4 and DNA-PKcs. A DNA-damaging agent that induces DNA double-stranded breaks (DSBs) does not affect the interaction between DDB2 and XRCC5. In addition, DSB-induced nuclear enrichment or chromatin association of XRCC5 does not involve DDB2, suggesting that the DDB2/XRCC5/6 complex represents a distinct pool of XRCC5/6 that is not directly involved in DNA break repair (NHEJ). In the absence of DNA damage, on the other hand, chromatin association of XRCC5 requires DDB2. We show that DDB2 recruits XRCC5 onto the promoter of SEMA3A, a DDB2-stimulated gene. Moreover, depletion of XRCC5 inhibits SEMA3A expression without affecting expression of VEGFA, a repression target of DDB2. Together our results show that DDB2 is critical for chromatin association of XRCC5/6 in the absence of DNA damage and provide evidence that XRCC5/6 are functional partners of DDB2 in its transcriptional stimulatory activity.

Indexed as

ChromatinDNA-Binding ProteinsDNA DamageDNA HelicasesDNA RepairGene Expression RegulationHCT116 CellsHumansKu AutoantigenProtein BindingSemaphorin-3ATranscription, GeneticChromatinDDB2 protein, humanDNA-Binding ProteinsDNA HelicasesKu AutoantigenSEMA3A protein, humanSemaphorin-3AXRCC5 protein, human

Identifiers

PMID28035050
PMCPMC5221623
OpenAlexW2549136542

What Socratic holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.