Evidence map›Paper›PMID 28212352›Full record

ArticlePathogens (Basel, Switzerland)2017

RTA Occupancy of the Origin of Lytic Replication during Murine Gammaherpesvirus 68 Reactivation from B Cell Latency.

Alexis L Santana, Darby G Oldenburg, Varvara Kirillov, Laraib Malik, Qiwen Dong, Roman Sinayev, Kenneth B Marcu, Douglas W White, Laurie T Krug

Open access · goldAbstract read
In one paragraph

Article in Pathogens (Basel, Switzerland), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Alexis L SantanaThe Ronald O. Perelman Department of Dermatology, New York University School of Medicine, New York, NY 10016, USA. Alexis.santana@nyumc.org.
Darby G OldenburgGundersen Health System, La Crosse, WI 54601, USA. darby.oldenburg@gmail.com.
Varvara KirillovDepartment of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook, NY 11794, USA. varvara.kirillov@stonybrook.edu.
Laraib MalikDepartment of Computer Science, Stony Brook University, Stony Brook, NY 11794, USA. laraib.malik@stonybrook.edu.
Qiwen DongProgram in Molecular and Cellular Biology, Stony Brook University, Stony Brook, NY 11794, USA. qiwen.dong@stonybrook.edu.
Roman SinayevApplied Mathematics and Statistics, Stony Brook University, Stony Brook, NY 11794, USA. roman@rsinayev.com.
Kenneth B MarcuDepartment of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook, NY 11794, USA. kenneth.marcu@stonybrook.edu.
Douglas W WhiteGundersen Health System, La Crosse, WI 54601, USA. DWWhite@gundersenhealth.org.
Laurie T KrugDepartment of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook, NY 11794, USA. laurie.krug@stonybrook.edu.
Stony Brook University · USGundersen Health System · USApplied Mathematics (United States) · USBiomedical Research Foundation of the Academy of Athens · GRNew York University · US

Funding

VIRAL ONCOLOGYT32CA009176 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI HEARING, PATRICK · 1985 to 2012
$5.2M
NCI NIH HHS T32 CA009176
6 · The paper itself

Abstract

RTA, the viral Replication and Transcription Activator, is essential for rhadinovirus lytic gene expression upon de novo infection and reactivation from latency. Lipopolysaccharide (LPS)/toll-like receptor (TLR)4 engagement enhances rhadinovirus reactivation. We developed two new systems to examine the interaction of RTA with host NF-kappaB (NF-κB) signaling during murine gammaherpesvirus 68 (MHV68) infection: a latent B cell line (HE-RIT) inducible for RTA-Flag expression and virus reactivation; and a recombinant virus (MHV68-RTA-Bio) that enabled in vivo biotinylation of RTA in BirA transgenic mice. LPS acted as a second stimulus to drive virus reactivation from latency in the context of induced expression of RTA-Flag. ORF6, the gene encoding the single-stranded DNA binding protein, was one of many viral genes that were directly responsive to RTA induction; expression was further increased upon treatment with LPS. However, NF-κB sites in the promoter of ORF6 did not influence RTA transactivation in response to LPS in HE-RIT cells. We found no evidence for RTA occupancy of the minimal RTA-responsive region of the ORF6 promoter, yet RTA was found to complex with a portion of the right origin of lytic replication (oriLyt-R) that contains predicted RTA recognition elements. RTA occupancy of select regions of the MHV-68 genome was also evaluated in our novel in vivo RTA biotinylation system. Streptavidin isolation of RTA-Bio confirmed complex formation with oriLyt-R in LPS-treated primary splenocytes from BirA mice infected with MHV68 RTA-Bio. We demonstrate the utility of reactivation-inducible B cells coupled with in vivo RTA biotinylation for mechanistic investigations of the interplay of host signaling with RTA.

Indexed as

gammaherpesviruslatencyNF-kappaBreactivation

Identifiers

PMID28212352
PMCPMC5371897
OpenAlexW2588040385

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.