Evidence map›Paper›PMID 28270451›Full record

ArticleBlood2017

Validation of single nucleotide polymorphisms in invasive aspergillosis following hematopoietic cell transplantation.

Cynthia E Fisher, Tobias M Hohl, Wenhong Fan, Barry E Storer, David M Levine, Lu Ping Zhao, Paul J Martin, Edus H Warren, Michael Boeckh, John A Hansen

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed, 1 pooled it
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 1 synthesis or guideline pooled it, 91 citations in OpenAlex.

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  16. Immunity to fungi in the lung.Seminars in immunology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Cynthia E FisherDepartment of Medicine, University of Washington, Seattle, WA.
Tobias M HohlInfectious Disease Service, Department of Medicine, and Immunology Program, Memorial Sloan Kettering Cancer Center, New York, NY.
Wenhong FanDivision of Public Health Sciences, and.
Barry E StorerClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA; and.
David M LevineDepartment of Biostatistics, University of Washington, Seattle, WA.
Lu Ping ZhaoDivision of Public Health Sciences, and.
Paul J MartinDepartment of Medicine, University of Washington, Seattle, WA.
Edus H WarrenClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA; and.
Michael BoeckhDepartment of Medicine, University of Washington, Seattle, WA.
John A HansenDepartment of Medicine, University of Washington, Seattle, WA.
Fred Hutch Cancer Center · USFaculty of Public Health · GBUniversity of Washington · USMemorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Eric Collisson · 1985 to 2026
$296.4M
VIRUS-MEDIATED MYELOSUPPRESSIONP01CA018029 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Geoffrey Roger HILL · 1985 to 2026
$128.4M
HOST DEFENSE TRAINING IN ALLERGY AND INFECTIOUS DISEASEST32AI007044 · NIAID · UNIVERSITY OF WASHINGTON · PI DAVID Neal FREDRICKS · 1985 to 2026
$14.6M
Whole Genome Association Analysis of Hematopoietic Cell Transplant (HCT) OutcomeR01HL105914 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI MARTIN, PAUL J · 2011 to 2019
$9.8M
Whole Genome Association Analysis of Hematopoietic Cell Transplant OutcomeR01HL087690 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HANSEN, JOHN ANDREW · 2006 to 2008
$4.1M
Infections in Hematopoietic Cell Transplant RecipientsK24HL093294 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BOECKH, MICHAEL J · 2009 to 2019
$1.5M
NCI NIH HHS P01 CA018029NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA015704NHLBI NIH HHS K24 HL093294NHLBI NIH HHS R01 HL087690NHLBI NIH HHS R01 HL105914NIAID NIH HHS T32 AI007044
6 · The paper itself

Abstract

Invasive aspergillosis (IA) is a significant cause of morbidity and mortality following allogeneic hematopoietic cell transplantation (HCT). Previous studies have reported an association between IA development and single nucleotide polymorphisms (SNPs), but many SNPs have not been replicated in a separate cohort. The presence of a positive serum galactomannan assay (SGM+) has also been associated with a worse prognosis in patients with IA, and genetic determinants in this subset of patients have not been systematically studied. The study cohort included 2609 HCT recipients and their donor pairs: 483 with proven/probable IA (183 SGM+) and 2126 with no IA by standard criteria. Of 25 SNPs previously published, we analyzed 20 in 14 genes that passed quality control. Samples were genotyped via microarray, and SNPs that could not be genotyped were imputed. The primary aim was to replicate SNPs associated with proven/probable IA at 2 years; secondary goals were to explore the associations using an end point of SGM+ IA or proven/probable IA using a different genetic model or time to IA (3 months vs 2 years) compared with the original study. Two SNPs in 2 genes (

Indexed as

Polymorphism, Single NucleotideAdultAspergillosisCohort StudiesC-Reactive ProteinDectin-1FemaleGenetic Predisposition to DiseaseGenotypeHematopoietic Stem Cell TransplantationHumansLectins, C-TypeMaleMiddle AgedPentraxinsSerum Amyloid P-ComponentCLEC7A protein, humanC-Reactive ProteinDectin-1Lectins, C-TypePentraxinsSerum Amyloid P-Component

Identifiers

PMID28270451
PMCPMC5428460
OpenAlexW2593309210

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.