Evidence map›Paper›PMID 28285124›Full record

ArticleJournal of molecular biology2017

Controllable Activation of Nanoscale Dynamics in a Disordered Protein Alters Binding Kinetics.

David J E Callaway, Tsutomu Matsui, Thomas Weiss, Laura R Stingaciu, Christopher B Stanley, William T Heller, Zimei Bu

Open access · bronzeAbstract read
In one paragraph

Article in Journal of molecular biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

  1. Nanoscale dynamics of the cadherin-catenin complex bound to vinculin revealed by neutron spin echo spectroscopy.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  2. Activated nanoscale actin-binding domain motion in the catenin-cadherin complex revealed by neutron spin echo spectroscopy.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

David J E CallawayDepartment of Chemistry and Biochemistry, City College of New York, CUNY, New York, NY 10031, USA. Electronic address: dcallaway@ccny.cuny.edu.
Tsutomu MatsuiStanford Synchrotron Radiation Light Source, Menlo Park, CA 94025, USA.
Thomas WeissStanford Synchrotron Radiation Light Source, Menlo Park, CA 94025, USA.
Laura R StingaciuJülich Centre for Neutron Science JCNS, Forschungszentrum Jülich GmbH, Outstation at SNS, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
Christopher B StanleyBiology and Soft Matter Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
William T HellerBiology and Soft Matter Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
Zimei BuDepartment of Chemistry and Biochemistry, City College of New York, CUNY, New York, NY 10031, USA. Electronic address: zbu@ccny.cuny.edu.
Oak Ridge National Laboratory · USCity College of New York · USStanford Synchrotron Radiation Lightsource · US

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
TNC FUNCTION IN APOPTOTIC ANTIGEN DRIVEN AUTOIMMUNITYG12RR003060 · NCRR · CITY COLLEGE OF NEW YORK · PI STAIANO-COICO, LISA F · 1985 to 2011
$26.1M
Cellular/Molecular Basis of Development: Research CenterG12MD007603 · NIMHD · CITY COLLEGE OF NEW YORK · PI PEZZANO, MARK · 2012 to 2017
$11.5M
Hormonal Regulation of NHERF1 in BoneR01DK105811 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FRIEDMAN, PETER A · 2016 to 2019
$2.5M
Struture snd Dynamic Determinants of Ion Channel Assembly by Adapter ProteinsR01HL086496 · NHLBI · RESEARCH INST OF FOX CHASE CAN CTR · PI BU, ZIMEI · 2007 to 2011
$2.1M
NCRR NIH HHS G12 RR003060NHLBI NIH HHS R01 HL086496NIDDK NIH HHS R01 DK105811NIGMS NIH HHS P41 GM103393NIMHD NIH HHS G12 MD007603
6 · The paper itself

Abstract

The phosphorylation of specific residues in a flexible disordered activation loop yields precise control of signal transduction. One paradigm is the phosphorylation of S339/S340 in the intrinsically disordered tail of the multi-domain scaffolding protein NHERF1, which affects the intracellular localization and trafficking of NHERF1 assembled signaling complexes. Using neutron spin echo spectroscopy (NSE), we show salt-concentration-dependent excitation of nanoscale motion at the tip of the C-terminal tail in the phosphomimic S339D/S340D mutant. The "tip of the whip" that is unleashed is near the S339/S340 phosphorylation site and flanks the hydrophobic Ezrin-binding motif. The kinetic association rate constant of the binding of the S339D/S340D mutant to the FERM domain of Ezrin is sensitive to buffer salt concentration, correlating with the excited nanoscale dynamics. The results suggest that electrostatics modulates the activation of nanoscale dynamics of an intrinsically disordered protein, controlling the binding kinetics of signaling partners. NSE can pinpoint the nanoscale dynamics changes in a highly specific manner.

Indexed as

Protein Processing, Post-TranslationalChromatography, GelHumansKineticsModels, MolecularMutant ProteinsPhosphoproteinsPhosphorylationProtein BindingProtein ConformationScattering, Small AngleSodium-Hydrogen ExchangersSpectrum AnalysisMutant ProteinsPhosphoproteinssodium-hydrogen exchanger regulatory factorSodium-Hydrogen Exchangersdisordered proteinnanoscale protein motionneutron spin echo spectroscopyprotein binding kineticsprotein dynamics

Identifiers

PMID28285124
PMCPMC5399307
OpenAlexW2594337808

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.