Evidence map›Paper›PMID 28289186›Full record

ArticleJournal of medical genetics2017

Multiple signals at the extended 8p23 locus are associated with susceptibility to systemic lupus erythematosus.

F Yesim Demirci, Xingbin Wang, David L Morris, Eleanor Feingold, Sasha Bernatsky, Christian Pineau, Ann Clarke, Rosalind Ramsey-Goldman, Susan Manzi, Timothy J Vyse and 1 more

Abstract read
In one paragraph

Article in Journal of medical genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 15 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Genomic architecture and functional effects of potential human inversion supergenes.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Review
  4. Article
  5. Systemic lupus erythematosus as a genetic disease.Clinical immunology (Orlando, Fla.) · 2022
    Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 3 countries.

F Yesim DemirciDepartment of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, USA.
Xingbin WangDepartment of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, USA.
David L MorrisDepartment of Medical & Molecular Genetics, King's College London, Guy's Hospital, London, UK.
Eleanor FeingoldDepartment of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, USA.
Sasha BernatskyDivision of Rheumatology, Department of Medicine, McGill University, Montreal, Canada.
Christian PineauDivision of Rheumatology, Department of Medicine, McGill University, Montreal, Canada.
Ann ClarkeDivision of Rheumatology, Department of Medicine, University of Calgary, Calgary, Canada.
Rosalind Ramsey-GoldmanDivision of Rheumatology, Feinberg School of Medicine, Northwestern University, Chicago, USA.
Susan ManziDepartment of Medicine, Lupus Center of Excellence, Allegheny Health Network, Pittsburgh, USA.
Timothy J VyseDepartment of Medical & Molecular Genetics, King's College London, Guy's Hospital, London, UK.
M I KambohDepartment of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, USA.
University of Pittsburgh · USMcGill University · CAAllegheny Health Network · USGuy's Hospital · GBKing's College London · GBNorthwestern University · USUniversity of Calgary · CA

Funding

Northwestern University Clinical and Translational Science Institute (NUCATS)UL1TR001422 · NCATS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI D'AQUILA, RICHARD · 2015 to 2023
$56.8M
Multidisciplinary Clinical and Translational Science (MCTS) Program (UL1)UL1TR000150 · NCATS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LLOYD-JONES, DONALD M · 2012 to 2013
$10.1M
Progression of Cardiovascular Disease in Lupus.R01AR046588 · NIAMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MANZI, SUSAN · 2001 to 2010
$4.9M
Physical Activity Changes & Thersholds: Quality of Life and Outcomes in Knee OAP60AR064464 · NIAMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI SHARMA, LEENA · 2013 to 2017
$4.5M
Immune/Inflammation Genomics and the Risk of SLE and CHDR01HL092397 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KAMBOH, M. ILYAS · 2009 to 2012
$2.8M
Molecular Genetics of BAT Genes and SLE RiskR01AR057028 · NIAMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DEMIRCI, F. YESIM · 2009 to 2013
$2.2M
SUPERANTIGEN INTERACTIONS WITH MHC CLASS II ANTIGENSP60AR030692 · NIAMS · NORTHWESTERN UNIVERSITY · PI CHANG, ROWLAND W · 1986 to 2001
$2.1M
Prothrombin Gene Variation and the Risk of SLE and CHDR01HL088648 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KAMBOH, M. ILYAS · 2007 to 2010
$1.9M
RCT of GnRH-a for ovarian protection during CYC therapy for rheumatic diseaseR01HD066139 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MC CUNE, WILLIAM J · 2010 to 2014
$1.7M
Reducing Depressive Symptoms in Systemic Lupus ErythematosusR01AR057338 · NIAMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GRECO, CAROL MARIE · 2009 to 2013
$1.6M
PATIENT-ORIENTED RESEARCH: SYSTEMIC LUPUS ERYTHEMATOSUSK24AR002138 · NIAMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI RAMSEY-GOLDMAN, ROSALIND · 2000 to 2009
$1.0M
Arthritis Research UK 19289NCATS NIH HHS UL1 TR000150NCATS NIH HHS UL1 TR001422NHLBI NIH HHS R01 HL088648NHLBI NIH HHS R01 HL092397NIAMS NIH HHS K24 AR002138NIAMS NIH HHS P60 AR030692NIAMS NIH HHS P60 AR064464NIAMS NIH HHS R01 AR046588NIAMS NIH HHS R01 AR057028NIAMS NIH HHS R01 AR057338NICHD NIH HHS R01 HD066139Wellcome Trust
6 · The paper itself

Abstract

backgroundA major systemic lupus erythematosus (SLE) susceptibility locus lies within a common inversion polymorphism region (encompassing 3.8 - 4.5  Mb) located at 8p23. Initially implicated genes included OBJECTIVE AND

methodsIn this case -control study, we further investigated the 'extended' 8p23 locus (~ 4  Mb) where we observed multiple SLE signals and assessed these signals for their relation to the inversion affecting this region. The study involved a North American discovery data set (

resultsMeta-analysis of 8p23 SNPs, with p < 0.05 in both data sets, identified 51 genome-wide significant SNPs (p < 5.0 × 10

conclusionsOur results implicate multiple (known+novel) SLE signals/genes at the extended 8p23 locus, beyond previously reported signals/genes, and suggest that this broad locus contributes to SLE risk through the effects of multiple genes/pathways.

Indexed as

AllelesCase-Control StudiesChromosomes, Human, Pair 8FemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyGenotypeHumansLupus Erythematosus, SystemicMaleMiddle AgedPolymorphism, Single NucleotideWhite People8p23BLKinversionLupusSLE

Identifiers

PMID28289186
PMCPMC5610905
OpenAlexW2595987262

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.