Evidence map›Paper›PMID 28301477›Full record

ArticlePLoS computational biology2017

Fragility of foot process morphology in kidney podocytes arises from chaotic spatial propagation of cytoskeletal instability.

Cibele V Falkenberg, Evren U Azeloglu, Mark Stothers, Thomas J Deerinck, Yibang Chen, John C He, Mark H Ellisman, James C Hone, Ravi Iyengar, Leslie M Loew

Abstract read
In one paragraph

Article in PLoS computational biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Podocytopathies.Nature reviews. Disease primers · 2020
    Review
  12. Review
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Cibele V FalkenbergR. D. Berlin Center for Cell Analysis & Modeling, U. Connecticut School of Medicine, Farmington, CT, United States of America.
Evren U AzelogluDepartment of Pharmacological Sciences, and Division of Nephrology, Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.ORCID 0000-0001-6137-109X
Mark StothersDepartment of Mechanical Engineering, Columbia University, New York, NY, United States of America.ORCID 0000-0001-9379-8805
Thomas J DeerinckNational Center for Microscopy and Imaging Research, UCSD, San Diego, CA, United States of America.
Yibang ChenDepartment of Pharmacological Sciences, and Division of Nephrology, Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.
John C HeDepartment of Pharmacological Sciences, and Division of Nephrology, Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.
Mark H EllismanNational Center for Microscopy and Imaging Research, UCSD, San Diego, CA, United States of America.
James C HoneDepartment of Mechanical Engineering, Columbia University, New York, NY, United States of America.ORCID 0000-0002-8084-3301
Ravi IyengarDepartment of Pharmacological Sciences, and Division of Nephrology, Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.
Leslie M LoewR. D. Berlin Center for Cell Analysis & Modeling, U. Connecticut School of Medicine, Farmington, CT, United States of America.ORCID 0000-0002-1851-4646

Funding

System Biology Center in New YorkP50GM071558 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI IYENGAR, SRINIVAS RAVI V · 2007 to 2017
$22.8M
IVEM and Image Analysis ResourceP41GM103412 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ELLISMAN, MARK H · 2012 to 2019
$17.9M
National Biomedical Computation Resource - Competitive Revision SupplementP41GM103426 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI AMARO, ROMMIE E · 2012 to 2019
$14.0M
TR&D4 Spatial Modeling: Modeling Framework for Cell MotilityP41GM103313 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI LOEW, LESLIE M · 2012 to 2018
$9.7M
Spatial Models of Cell Regulatory NetworksR01GM072853 · NIGMS · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI HONE, JAMES C, IYENGAR, SRINIVAS RAVI V · 2005 to 2019
$6.1M
NIGMS NIH HHS P41 GM103313NIGMS NIH HHS P41 GM103412NIGMS NIH HHS P41 GM103426NIGMS NIH HHS P50 GM071558NIGMS NIH HHS R01 GM072853
6 · The paper itself

Abstract

Kidney podocytes' function depends on fingerlike projections (foot processes) that interdigitate with those from neighboring cells to form the glomerular filtration barrier. The integrity of the barrier depends on spatial control of dynamics of actin cytoskeleton in the foot processes. We determined how imbalances in regulation of actin cytoskeletal dynamics could result in pathological morphology. We obtained 3-D electron microscopy images of podocytes and used quantitative features to build dynamical models to investigate how regulation of actin dynamics within foot processes controls local morphology. We find that imbalances in regulation of actin bundling lead to chaotic spatial patterns that could impair the foot process morphology. Simulation results are consistent with experimental observations for cytoskeletal reconfiguration through dysregulated RhoA or Rac1, and they predict compensatory mechanisms for biochemical stability. We conclude that podocyte morphology, optimized for filtration, is intrinsically fragile, whereby local transient biochemical imbalances may lead to permanent morphological changes associated with pathophysiology.

Indexed as

Models, BiologicalActin CytoskeletonCell PolarityCells, CulturedCell SizeCell Surface ExtensionsComputer SimulationHumansNonlinear DynamicsPodocytesSpatio-Temporal Analysis

Identifiers

PMID28301477
PMCPMC5373631

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.