Evidence map›Paper›PMID 28534133›Full record

ArticleRice (New York, N.Y.)2017

Silencing of the Rice Gene LRR1 Compromises Rice Xa21 Transcript Accumulation and XA21-Mediated Immunity.

Daniel F Caddell, Chang-Jin Park, Nicholas C Thomas, Patrick E Canlas, Pamela C Ronald

Abstract read
In one paragraph

Article in Rice (New York, N.Y.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Development of Molecular Markers for Bacterial Leaf Streak Resistance GeneInternational journal of molecular sciences · 2025
    Article
  3. Article
  4. Article
  5. Review
  6. Open biology · 2022
    Article
  7. Silencing a Simple Extracellular Leucine-Rich Repeat GeneInternational journal of molecular sciences · 2021
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Daniel F CaddellDepartment of Plant Pathology and the Genome Center, University of California, Davis, Davis, CA, 95616, USA.
Chang-Jin ParkDepartment of Plant Pathology and the Genome Center, University of California, Davis, Davis, CA, 95616, USA.
Nicholas C ThomasDepartment of Plant Pathology and the Genome Center, University of California, Davis, Davis, CA, 95616, USA.
Patrick E CanlasDepartment of Plant Pathology and the Genome Center, University of California, Davis, Davis, CA, 95616, USA.
Pamela C RonaldDepartment of Plant Pathology and the Genome Center, University of California, Davis, Davis, CA, 95616, USA. pcronald@ucdavis.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe rice immune receptor XA21 confers resistance to Xanthomonas oryzae pv. oryzae (Xoo), the causal agent of bacterial leaf blight. We previously demonstrated that an auxilin-like protein, XA21 BINDING PROTEIN 21 (XB21), positively regulates resistance to Xoo.

resultsTo further investigate the function of XB21, we performed a yeast two-hybrid screen. We identified 22 unique XB21 interacting proteins, including LEUCINE-RICH REPEAT PROTEIN 1 (LRR1), which we selected for further analysis. Silencing of LRR1 in the XA21 genetic background (XA21-LRR1Ri) compromises resistance to Xoo compared with control XA21 plants. XA21-LRR1Ri plants have reduced Xa21 transcript levels and reduced expression of genes that serve as markers of XA21-mediated activation. Overexpression of LRR1 is insufficient to alter resistance to Xoo in rice lines lacking XA21.

conclusionsTaken together, our results indicate that LRR1 is required for wild-type Xa21 transcript expression and XA21-mediated immunity.

Indexed as

ImmunityLeucine rich repeatLRR1RiceXA21Xanthomonas oryzae pv. oryzaeXB21

Identifiers

PMID28534133
PMCPMC5440417

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.