Evidence map›Paper›PMID 28622108›Full record

ArticleNucleus (Austin, Tex.)2017

Fluctuations of pol I and fibrillarin contents of the nucleoli.

M Hornáček, L Kováčik, T Mazel, D Cmarko, E Bártová, I Raška, E Smirnov

Abstract read
In one paragraph

Article in Nucleus (Austin, Tex.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Nucleolus and chromatin.Histochemistry and cell biology · 2018
    Review
  5. Discontinuous transcription.Nucleus (Austin, Tex.) · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

M Hornáčeka Institute of Biology and Medical Genetics, First Faculty of Medicine , Charles University, and General University Hospital in Prague , Prague , Czech Republic.
L Kováčika Institute of Biology and Medical Genetics, First Faculty of Medicine , Charles University, and General University Hospital in Prague , Prague , Czech Republic.
T Mazela Institute of Biology and Medical Genetics, First Faculty of Medicine , Charles University, and General University Hospital in Prague , Prague , Czech Republic.
D Cmarkoa Institute of Biology and Medical Genetics, First Faculty of Medicine , Charles University, and General University Hospital in Prague , Prague , Czech Republic.
E Bártováa Institute of Biology and Medical Genetics, First Faculty of Medicine , Charles University, and General University Hospital in Prague , Prague , Czech Republic.
I Raškaa Institute of Biology and Medical Genetics, First Faculty of Medicine , Charles University, and General University Hospital in Prague , Prague , Czech Republic.
E Smirnova Institute of Biology and Medical Genetics, First Faculty of Medicine , Charles University, and General University Hospital in Prague , Prague , Czech Republic.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nucleoli are formed on the basis of ribosomal DNA (rDNA) clusters called Nucleolus Organizer Regions (NORs). Each NOR contains multiple genes coding for RNAs of the ribosomal particles. The prominent components of the nucleolar ultrastructure, fibrillar centers (FC) and dense fibrillar components (DFC), together compose FC/DFC units. These units are centers of rDNA transcription by RNA polymerase I (pol I), as well as the early processing events, in which an essential role belongs to fibrillarin. Each FC/DFC unit probably corresponds to a single transcriptionally active gene. In this work, we transfected human-derived cells with GFP-RPA43 (subunit of pol I) and RFP-fibrillarin. Following changes of the fluorescent signals in individual FC/DFC units, we found two kinds of kinetics: 1) the rapid fluctuations with periods of 2-3 min, when the pol I and fibrillarin signals oscillated in anti-phase manner, and the intensities of pol I in the neighboring FC/DFC units did not correlate. 2) fluctuations with periods of 10 to 60 min, in which pol I and fibrillarin signals measured in the same unit did not correlate, but pol I signals in the units belonging to different nucleoli were synchronized. Our data indicate that a complex pulsing activity of transcription as well as early processing is common for ribosomal genes.

Indexed as

Cell NucleolusChromosomal Proteins, Non-HistoneDNA-Directed RNA PolymerasesHeLa CellsHumansImmunohistochemistryMicroscopy, ConfocalChromosomal Proteins, Non-HistoneDNA-Directed RNA Polymerasesfibrillarinfibrillarinfluctuationpol IrDNAtranscription pulsing

Identifiers

PMID28622108
PMCPMC5597295

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.