Evidence map›Paper›PMID 28623258›Full record

ArticleScientific reports2017

Chromatin organization regulates viral egress dynamics.

Vesa Aho, Markko Myllys, Visa Ruokolainen, Satu Hakanen, Elina Mäntylä, Jori Virtanen, Veijo Hukkanen, Thomas Kühn, Jussi Timonen, Keijo Mattila and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 35 citations in OpenAlex.

  1. Nuclear speckles are regulatory hubs for viral and host mRNA expression during HSV-1 infection.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  20. Soft X-ray tomography: virtual sculptures from cell cultures.Current opinion in structural biology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 3 countries.

Vesa AhoDepartment of Physics, and Nanoscience Center, University of Jyväskylä, Jyväskylä, Finland.
Markko MyllysDepartment of Physics, and Nanoscience Center, University of Jyväskylä, Jyväskylä, Finland.
Visa RuokolainenDepartment of Biological and Environmental Science, and Nanoscience Center, University of Jyväskylä, Jyväskylä, Finland.
Satu HakanenDepartment of Biological and Environmental Science, and Nanoscience Center, University of Jyväskylä, Jyväskylä, Finland.
Elina MäntyläDepartment of Biological and Environmental Science, and Nanoscience Center, University of Jyväskylä, Jyväskylä, Finland.
Jori VirtanenInstitute of Biotechnology, University of Helsinki, Helsinki, Finland.
Veijo HukkanenFaculty of Medicine, University of Turku, Turku, Finland.
Thomas KühnDepartment of Applied Physics, University of Eastern Finland, Kuopio, Finland.
Jussi TimonenDepartment of Physics, and Nanoscience Center, University of Jyväskylä, Jyväskylä, Finland.ORCID 0000-0003-0050-2054
Keijo MattilaDepartment of Physics, and Nanoscience Center, University of Jyväskylä, Jyväskylä, Finland.ORCID 0000-0002-3307-8723
Carolyn A LarabellDepartment of Anatomy, University of California San Francisco, San Francisco, California, USA.
Maija Vihinen-RantaDepartment of Biological and Environmental Science, and Nanoscience Center, University of Jyväskylä, Jyväskylä, Finland. maija.vihinen-ranta@jyu.fi.
University of Jyväskylä · FIFinnish Meteorological Institute · FIITMO University · RULawrence Berkeley National Laboratory · USTampere University · FIUniversity of Helsinki · FIUniversity of Turku · FI

Funding

TrainingP41GM103445 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LARABELL, CAROLYN A · 2012 to 2019
$8.2M
NIGMS NIH HHS P41 GM103445
6 · The paper itself

Abstract

Various types of DNA viruses are known to elicit the formation of a large nuclear viral replication compartment and marginalization of the cell chromatin. We used three-dimensional soft x-ray tomography, confocal and electron microscopy, combined with numerical modelling of capsid diffusion to analyse the molecular organization of chromatin in herpes simplex virus 1 infection and its effect on the transport of progeny viral capsids to the nuclear envelope. Our data showed that the formation of the viral replication compartment at late infection resulted in the enrichment of heterochromatin in the nuclear periphery accompanied by the compaction of chromatin. Random walk modelling of herpes simplex virus 1-sized particles in a three-dimensional soft x-ray tomography reconstruction of an infected cell nucleus demonstrated that the peripheral, compacted chromatin restricts viral capsid diffusion, but due to interchromatin channels capsids are able to reach the nuclear envelope, the site of their nuclear egress.

Indexed as

Virus Physiological PhenomenaVirus ReleaseAnimalsBiological TransportBiomarkersCell LineCell NucleusChromatinFemaleHistonesMiceMicroscopy, ConfocalBiomarkersChromatinHistones

Identifiers

PMID28623258
PMCPMC5473834
OpenAlexW2625176464

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.