Evidence map›Paper›PMID 28679029›Full record

ArticleAngewandte Chemie (International ed. in English)2017

Long-Term Live-Cell STED Nanoscopy of Primary and Cultured Cells with the Plasma Membrane HIDE Probe DiI-SiR.

Alexander D Thompson, Mitchell H Omar, Felix Rivera-Molina, Zhiqun Xi, Anthony J Koleske, Derek K Toomre, Alanna Schepartz

Open access · greenAbstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Fluorescent Solvatochromic Probes for Long-Term Imaging of Lipid Order in Living Cells.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Bleaching-Resistant Super-Resolution Fluorescence Microscopy.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2022
    Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Greasing the Wheels of Lipid Biology with Chemical Tools.Trends in biochemical sciences · 2018
    Review
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Alexander D ThompsonDepartment of Chemistry, Yale University, 225 Prospect Street, New Haven, CT, 06511, USA.
Mitchell H OmarDepartment of Molecular Biophysics and Biochemistry and Interdepartmental Neuroscience Program, Yale University, 333 Cedar Street, New Haven, CT, 06511, USA.
Felix Rivera-MolinaDepartment of Cell Biology, Yale University, 333 Cedar Street, New Haven, CT, 06511, USA.
Zhiqun XiDepartment of Cell Biology, Yale University, 333 Cedar Street, New Haven, CT, 06511, USA.
Anthony J KoleskeDepartment of Molecular Biophysics and Biochemistry and Interdepartmental Neuroscience Program, Yale University, 333 Cedar Street, New Haven, CT, 06511, USA.
Derek K ToomreDepartment of Cell Biology, Yale University, 333 Cedar Street, New Haven, CT, 06511, USA.
Alanna SchepartzDepartment of Chemistry, Yale University, 225 Prospect Street, New Haven, CT, 06511, USA.ORCID 0000-0003-2127-3932
Yale University · US

Funding

Enabling Nanoscale Dynamic Imaging of Vesicles and OrganellesR01GM118486 · NIGMS · YALE UNIVERSITY · PI BADDELEY, DAVID, BEWERSDORF, JOERG · 2016 to 2019
$3.4M
Surveying protein partnerships and assembly with bipartite tetracysteine displayR01GM083257 · NIGMS · YALE UNIVERSITY · PI SCHEPARTZ, ALANNA · 2008 to 2018
$3.2M
Laminin control of CNS dendrite and dendritic spine developmentR01NS089662 · NINDS · YALE UNIVERSITY · PI GRUTZENDLER, JAIME, KOLESKE, ANTHONY J · 2014 to 2018
$1.8M
A super-resolution microscope for research and educationS10OD020142 · OD · YALE UNIVERSITY · PI NATHANSON, MICHAEL H · 2015 to 2015
$600k
Expanding the HIDE nanoscopy toolbox: More organelles, colors, and modalitiesR01GM131372 · NIGMS · YALE UNIVERSITY · PI SCHEPARTZ, ALANNA · 2019 to 2019
$299k
Laminin control of synaptic function and dendritic stabilityF31NS090767 · NINDS · YALE UNIVERSITY · PI OMAR, MITCHELL HAMED · 2014 to 2017
$116k
Tailored Probes for Super-Resolution MicroscopyF31GM119259 · NIGMS · YALE UNIVERSITY · PI THOMPSON, ALEXANDER · 2016 to 2017
$66k
NIGMS NIH HHS F31 GM119259NIGMS NIH HHS R01 GM083257NIGMS NIH HHS R01 GM118486NIGMS NIH HHS R01 GM131372NIH HHS S10 OD020142NINDS NIH HHS F31 NS090767NINDS NIH HHS R01 NS089662Wellcome TrustWellcome Trust 095927/A/11/Z
6 · The paper itself

Abstract

Super-resolution imaging of live cells over extended time periods with high temporal resolution requires high-density labeling and extraordinary fluorophore photostability. Herein, we achieve this goal by combining the attributes of the high-density plasma membrane probe DiI-TCO and the photostable STED dye SiR-Tz. These components undergo rapid tetrazine ligation within the plasma membrane to generate the HIDE probe DiI-SiR. Using DiI-SiR, we visualized filopodia dynamics in HeLa cells over 25 min at 0.5 s temporal resolution, and visualized dynamic contact-mediated repulsion events in primary mouse hippocampal neurons over 9 min at 2 s temporal resolution. HIDE probes such as DiI-SiR are non-toxic and do not require transfection, and their apparent photostability significantly improves the ability to monitor dynamic processes in live cells at super-resolution over biologically relevant timescales.

Indexed as

NanotechnologyOptical ImagingCell MembraneFluorescent DyesHeLa CellsHumansMicroscopy, FluorescenceMolecular StructureTumor Cells, CulturedFluorescent Dyesbioorthogonal chemistryfluorophoresmembranesneuronssuper-resolution microscopy

Identifiers

PMID28679029
PMCPMC5576494
OpenAlexW2724788812

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.