Evidence map›Paper›PMID 28838146›Full record

ArticleThe Journal of infectious diseases2017

Prolonged Shedding of Human Coronavirus in Hematopoietic Cell Transplant Recipients: Risk Factors and Viral Genome Evolution.

Chikara Ogimi, Alexander L Greninger, Alpana A Waghmare, Jane M Kuypers, Ryan C Shean, Hu Xie, Wendy M Leisenring, Terry L Stevens-Ayers, Keith R Jerome, Janet A Englund and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 74 citations in OpenAlex.

  1. Trial
  2. Initial High Viral Load Is Associated with Prolonged Shedding of Human Rhinovirus in Allogeneic Hematopoietic Cell Transplant Recipients.Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation · 2018
    Trial
  3. Review
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  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
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  13. Article
  14. Interrelations between COVID-19 and other disorders.Clinical immunology (Orlando, Fla.) · 2021
    Review
  15. Article
  16. Review
  17. SARS-CoV-2 infections in children and young people.Clinical immunology (Orlando, Fla.) · 2020
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Chikara OgimiVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center.
Alexander L GreningerVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center.
Alpana A WaghmareVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center.
Jane M KuypersVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center.
Ryan C SheanVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center.
Hu XieClinical Research Division, Fred Hutchinson Cancer Research Center.
Wendy M LeisenringClinical Research Division, Fred Hutchinson Cancer Research Center.
Terry L Stevens-AyersVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center.
Keith R JeromeVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center.
Janet A EnglundDepartment of Pediatrics, University of Washington.
Michael BoeckhVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center.
Cancer Research Center · USCape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZAFred Hutch Cancer Center · USCancer Research And Biostatistics · USUniversity of Washington · US

Funding

VIRUS-MEDIATED MYELOSUPPRESSIONP01CA018029 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Geoffrey Roger HILL · 1985 to 2026
$128.4M
Infections in Hematopoietic Cell Transplant RecipientsK24HL093294 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BOECKH, MICHAEL J · 2009 to 2019
$1.5M
Viral and Host Biomarkers of Human Rhinovirus Disease Severity in TransplantationK23AI114844 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI WAGHMARE, ALPANA AMALKANT · 2015 to 2019
$897k
NCI NIH HHS P01 CA018029NHLBI NIH HHS K24 HL093294NIAID NIH HHS K23 AI114844
6 · The paper itself

Abstract

Background: Recent data suggest that human coronavirus (HCoV) pneumonia is associated with significant mortality in hematopoietic cell transplant (HCT) recipients. Investigation of risk factors for prolonged shedding and intrahost genome evolution may provide critical information for development of novel therapeutics. Methods: We retrospectively reviewed HCT recipients with HCoV detected in nasal samples by polymerase chain reaction (PCR). HCoV strains were identified using strain-specific PCR. Shedding duration was defined as time between first positive and first negative sample. Logistic regression analyses were performed to evaluate factors for prolonged shedding (≥21 days). Metagenomic next-generation sequencing (mNGS) was conducted when ≥4 samples with cycle threshold values of <28 were available. Results: Seventeen of 44 patients had prolonged shedding. Among 31 available samples, 35% were OC43, 32% were NL63, 19% were HKU1, and 13% were 229E; median shedding duration was similar between strains (P = .79). Bivariable logistic regression analyses suggested that high viral load, receipt of high-dose steroids, and myeloablative conditioning were associated with prolonged shedding. mNGS among 5 subjects showed single-nucleotide polymorphisms from OC43 and NL63 starting 1 month following onset of shedding. Conclusions: High viral load, high-dose steroids, and myeloablative conditioning were associated with prolonged shedding of HCoV in HCT recipients. Genome changes were consistent with the expected molecular clock of HCoV.

Indexed as

Hematopoietic Stem Cell TransplantationVirus SheddingAdolescentAdultAgedChildCoronavirusCoronavirus InfectionsFemaleGenome, ViralHumansLogistic ModelsMaleMiddle AgedRespiratory Tract InfectionsRetrospective StudiesSteroidsgenome evolutionhematopoietic cell transplanthuman coronavirussheddingwhole genome sequencing

Identifiers

PMID28838146
PMCPMC5853311
OpenAlexW2620339392

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.