Evidence map›Paper›PMID 28844648›Full record

ArticleCurrent biology : CB2017

Drosophila PAF1 Modulates PIWI/piRNA Silencing Capacity.

Josef P Clark, Reazur Rahman, Nachen Yang, Linda H Yang, Nelson C Lau

Open access · bronzeAbstract read
In one paragraph

Article in Current biology : CB, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  8. Article
  9. Article
  10. Article
  11. The piRNA pathway in Drosophila ovarian germ and somatic cells.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2020
    Review
  12. eLife · 2019
    Article
  13. Article
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Josef P ClarkDepartment of Biology and Rosenstiel Basic Medical Science Research Center, Brandeis University, Waltham, MA, USA.
Reazur RahmanDepartment of Biology and Rosenstiel Basic Medical Science Research Center, Brandeis University, Waltham, MA, USA.
Nachen YangDepartment of Biology and Rosenstiel Basic Medical Science Research Center, Brandeis University, Waltham, MA, USA.
Linda H YangDepartment of Biology and Rosenstiel Basic Medical Science Research Center, Brandeis University, Waltham, MA, USA.
Nelson C LauDepartment of Biology and Rosenstiel Basic Medical Science Research Center, Brandeis University, Waltham, MA, USA. Electronic address: nclau@bu.edu.
Brandeis University · US

Funding

Mouse CoreP30NS045713 · NINDS · BRANDEIS UNIVERSITY · PI ROSBASH, MICHAEL · 2003 to 2013
$7.8M
GENETIC AND BIOCHEMICAL MECHANISMS OF REGULATIONT32GM007122 · NIGMS · BRANDEIS UNIVERSITY · PI LOVETT, SUSAN THOMAS · 1985 to 2020
$7.5M
Transposon landscapes and transcriptome diversity in aging neuronsR01AG052465 · NIA · BRANDEIS UNIVERSITY · PI LAU, NELSON C · 2016 to 2020
$2.0M
The Function of piRNAs and the piRNA ComplexR00HD057298 · NICHD · BRANDEIS UNIVERSITY · PI LAU, NELSON C · 2009 to 2011
$706k
NIA NIH HHS R01 AG052465NICHD NIH HHS R00 HD057298NIGMS NIH HHS T32 GM007122NINDS NIH HHS P30 NS045713
6 · The paper itself

Abstract

To test the directness of factors in initiating PIWI-directed gene silencing, we employed a Piwi-interacting RNA (piRNA)-targeted reporter assay in Drosophila ovary somatic sheet (OSS) cells [1]. This assay confirmed direct silencing roles for piRNA biogenesis factors and PIWI-associated factors [2-12] but suggested that chromatin-modifying proteins may act downstream of the initial silencing event. Our data also revealed that RNA-polymerase-II-associated proteins like PAF1 and RTF1 antagonize PIWI-directed silencing. PAF1 knockdown enhances PIWI silencing of reporters when piRNAs target the transcript region proximal to the promoter. Loss of PAF1 suppresses endogenous transposable element (TE) transcript maturation, whereas a subset of gene transcripts and long-non-coding RNAs adjacent to TE insertions are affected by PAF1 knockdown in a similar fashion to piRNA-targeted reporters. Additionally, transcription activation at specific TEs and TE-adjacent loci during PIWI knockdown is suppressed when PIWI and PAF1 levels are both reduced. Our study suggests a mechanistic conservation between fission yeast PAF1 repressing AGO1/small interfering RNA (siRNA)-directed silencing [13, 14] and Drosophila PAF1 opposing PIWI/piRNA-directed silencing.

Indexed as

Gene SilencingAnimalsArgonaute ProteinsDrosophila melanogasterDrosophila ProteinsFemaleOvaryRNA, Small InterferingArgonaute Proteinsatms protein, DrosophilaDrosophila Proteinspiwi protein, DrosophilaRNA, Small InterferingDrosophilagene silencingPAF1piRNAPiwi

Identifiers

PMID28844648
PMCPMC5611886
OpenAlexW2749391623

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.