Evidence map›Paper›PMID 28880316›Full record

ArticleChemical communications (Cambridge, England)2017

A modular design for minor groove binding and recognition of mixed base pair sequences of DNA.

Pu Guo, Ananya Paul, Arvind Kumar, Narinder K Harika, Siming Wang, Abdelbasset A Farahat, David W Boykin, W David Wilson

Abstract read
In one paragraph

Article in Chemical communications (Cambridge, England), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
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  6. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Pu GuoDepartment of Chemistry and Center for Diagnostics and Therapeutics Georgia State University, 50 Decatur St Se, Atlanta, GA 30303-3083, USA. wdw@gsu.edu.ORCID http://orcid.org/0000-0002-4599-2037
Ananya PaulDepartment of Chemistry and Center for Diagnostics and Therapeutics Georgia State University, 50 Decatur St Se, Atlanta, GA 30303-3083, USA. wdw@gsu.edu.ORCID http://orcid.org/0000-0003-4592-3442
Arvind KumarDepartment of Chemistry and Center for Diagnostics and Therapeutics Georgia State University, 50 Decatur St Se, Atlanta, GA 30303-3083, USA. wdw@gsu.edu.ORCID http://orcid.org/0000-0003-0282-3134
Narinder K HarikaDepartment of Chemistry and Center for Diagnostics and Therapeutics Georgia State University, 50 Decatur St Se, Atlanta, GA 30303-3083, USA. wdw@gsu.edu.ORCID http://orcid.org/0000-0002-3637-6697
Siming WangDepartment of Chemistry and Center for Diagnostics and Therapeutics Georgia State University, 50 Decatur St Se, Atlanta, GA 30303-3083, USA. wdw@gsu.edu.ORCID http://orcid.org/0000-0003-2419-8739
Abdelbasset A FarahatDepartment of Chemistry and Center for Diagnostics and Therapeutics Georgia State University, 50 Decatur St Se, Atlanta, GA 30303-3083, USA. wdw@gsu.edu.ORCID http://orcid.org/0000-0003-0664-5670
David W BoykinDepartment of Chemistry and Center for Diagnostics and Therapeutics Georgia State University, 50 Decatur St Se, Atlanta, GA 30303-3083, USA. wdw@gsu.edu.ORCID http://orcid.org/0000-0001-9712-8278
W David WilsonDepartment of Chemistry and Center for Diagnostics and Therapeutics Georgia State University, 50 Decatur St Se, Atlanta, GA 30303-3083, USA. wdw@gsu.edu.ORCID http://orcid.org/0000-0001-5225-5089

Funding

Molecular Design for Specific Recognition of Functional DNA SequencesR01GM111749 · NIGMS · GEORGIA STATE UNIVERSITY · PI WILSON, W DAVID · 2014 to 2021
$2.5M
NIGMS NIH HHS R01 GM111749
6 · The paper itself

Abstract

The design and synthesis of compounds that target mixed, AT/GC, DNA sequences is described. The design concept connects two N-methyl-benzimidazole-thiophene single GC recognition units with a flexible linker that lets the compound fit the shape and twist of the DNA minor groove while covering a full turn of the double helix.

Indexed as

Base PairingBase SequenceBenzimidazolesBinding SitesDNAMolecular StructureThiophenesbenzimidazoleBenzimidazolesDNAThiophenes

Identifiers

PMID28880316
PMCPMC5616130

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.