Evidence map›Paper›PMID 28928403›Full record

ArticleNature communications2017

Dimerization regulates both deaminase-dependent and deaminase-independent HIV-1 restriction by APOBEC3G.

Michael Morse, Ran Huo, Yuqing Feng, Ioulia Rouzina, Linda Chelico, Mark C Williams

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Host-virus interaction and viral evasion.Cell biology international · 2021
    Review
  11. Interactions of APOBEC3s with DNA and RNA.Current opinion in structural biology · 2021
    Review
  12. Review
  13. Characterization of an A3G-VifMolecular & cellular proteomics : MCP · 2021
    Article
  14. Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Michael MorseDepartment of Physics, Northeastern University, 360 Huntington Avenue, Boston, MA, 02115, USA.
Ran HuoDepartment of Physics, Northeastern University, 360 Huntington Avenue, Boston, MA, 02115, USA.
Yuqing FengDepartment of Microbiology and Immunology, University of Saskatchewan, 107 Wiggins Road, Saskatoon, SK, Canada, S7N 5E5.
Ioulia RouzinaDepartment of Chemistry and Biochemistry, Ohio State University, 100 West 18th Avenue, Columbus, OH, 43210, USA.
Linda ChelicoDepartment of Microbiology and Immunology, University of Saskatchewan, 107 Wiggins Road, Saskatoon, SK, Canada, S7N 5E5.
Mark C WilliamsDepartment of Physics, Northeastern University, 360 Huntington Avenue, Boston, MA, 02115, USA. mark@neu.edu.ORCID http://orcid.org/0000-0003-3219-376X
Northeastern University · USUniversity of Saskatchewan · CAThe Ohio State University · US

Funding

Single Molecule HIV-1 Replication InteractionsR01GM072462 · NIGMS · NORTHEASTERN UNIVERSITY · PI WILLIAMS, MARK C · 2004 to 2018
$3.9M
6 · The paper itself

Abstract

APOBEC3G (A3G) is a human enzyme that inhibits human immunodeficiency virus type 1 (HIV-1) infectivity, in the absence of the viral infectivity factor Vif, through deoxycytidine deamination and a deamination-independent mechanism. A3G converts from a fast to a slow binding state through oligomerization, which suggests that large A3G oligomers could block HIV-1 reverse transcriptase-mediated DNA synthesis, thereby inhibiting HIV-1 replication. However, it is unclear how the small number of A3G molecules found in the virus could form large oligomers. Here we measure the single-stranded DNA binding and oligomerization kinetics of wild-type and oligomerization-deficient A3G, and find that A3G first transiently binds DNA as a monomer. Subsequently, A3G forms N-terminal domain-mediated dimers, whose dissociation from DNA is reduced and their deaminase activity inhibited. Overall, our results suggest that the A3G molecules packaged in the virion first deaminate viral DNA as monomers before dimerizing to form multiple enzymatically deficient roadblocks that may inhibit reverse transcription.APOBEC3G inhibits HIV-1 viral replication via catalytic and non-catalytic processes. Here the authors show that APOBEC3G binds single-stranded DNA as an active deaminase monomer, subsequently forming catalytic-inactive dimers that block reverse transcriptase-mediated DNA synthesis.

Indexed as

DimerizationVirus ReplicationAPOBEC-3G DeaminaseDeaminationDNA, Single-StrandedDNA, ViralHIV-1HIV Reverse TranscriptaseHumansKineticsvif Gene Products, Human Immunodeficiency VirusVirionAPOBEC-3G DeaminaseAPOBEC3G protein, humanDNA, Single-StrandedDNA, ViralHIV Reverse Transcriptasereverse transcriptase, Human immunodeficiency virus 1vif Gene Products, Human Immunodeficiency Virus

Identifiers

PMID28928403
PMCPMC5605669
OpenAlexW2754617114

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.