Evidence map›Paper›PMID 29084163›Full record

ArticleViruses2017

Atomic Resolution Structure of the Oncolytic Parvovirus LuIII by Electron Microscopy and 3D Image Reconstruction.

Nikéa Pittman, Adam Misseldine, Lorena Geilen, Sujata Halder, J Kennon Smith, Justin Kurian, Paul Chipman, Mandy Janssen, Robert Mckenna, Timothy S Baker and 4 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
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  4. Article
  5. Viruses · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Nikéa PittmanDepartment of Biochemistry and Molecular Biology, University of Florida, Gainesville, FL 32611, USA. nikea@ufl.edu.ORCID 0000-0002-1629-2488
Adam MisseldineDepartment of Biochemistry and Molecular Biology, University of Florida, Gainesville, FL 32611, USA. adammisseldine@ufl.edu.
Lorena GeilenDepartment of Biochemistry and Molecular Biology, University of Florida, Gainesville, FL 32611, USA. lorenageilen@ufl.edu.
Sujata HalderDepartment of Biochemistry and Molecular Biology, University of Florida, Gainesville, FL 32611, USA. halder.sujata@gmail.com.
J Kennon SmithDepartment of Biochemistry and Molecular Biology, University of Florida, Gainesville, FL 32611, USA. jkennonsmith@ufl.edu.
Justin KurianDepartment of Biochemistry and Molecular Biology, University of Florida, Gainesville, FL 32611, USA. justinkurian@ufl.edu.
Paul ChipmanDepartment of Biochemistry and Molecular Biology, University of Florida, Gainesville, FL 32611, USA. pchipman@ufl.edu.
Mandy JanssenDepartment of Chemistry and Biochemistry and Division of Biological Sciences, University of California-San Diego, San Diego, CA 92093, USA. mjanssen@nanoimagingservices.com.
Robert MckennaDepartment of Biochemistry and Molecular Biology, University of Florida, Gainesville, FL 32611, USA. rmckenna@ufl.edu.
Timothy S BakerDepartment of Chemistry and Biochemistry and Division of Biological Sciences, University of California-San Diego, San Diego, CA 92093, USA. tsb@ucsd.edu.
Anthony D'AbramoDepartment of Laboratory Medicine, Yale University Medical School, New Haven, CT 06520, USA. anthony.dabramo@yale.edu.
Susan CotmoreDepartment of Laboratory Medicine, Yale University Medical School, New Haven, CT 06520, USA. susan.cotmore@yale.edu.
Peter TattersallDepartment of Laboratory Medicine, Yale University Medical School, New Haven, CT 06520, USA. peter.tattersall@yale.edu.
Mavis Agbandje-McKennaDepartment of Biochemistry and Molecular Biology, University of Florida, Gainesville, FL 32611, USA. mckenna@ufl.edu.
University of Florida · USYale University · USUniversity of California San Diego · US

Funding

MOLECULAR BASIS OF PARVOVIRUS TARGET CELL SPECIFICITYR01CA029303 · NCI · YALE UNIVERSITY · PI TATTERSALL, PETER J. · 1985 to 2016
$7.5M
Structural studies of AAV capsids and their glycan receptor interactionsR01GM082946 · NIGMS · UNIVERSITY OF FLORIDA · PI ROBERT MCKENNA · 2007 to 2026
$6.1M
BASIC MICROBIOLOGY &INFECTIOUS DISEASEST32AI007110 · NIAID · UNIVERSITY OF FLORIDA · PI Stephanie M Karst · 1985 to 2026
$4.3M
MICROSCOPY &IMAGE ANALYSIS OF UNSTAINED MACROMOLECULESR01GM033050 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BAKER, TIMOTHY S · 1985 to 2017
$4.3M
West/Midwest Consortium for High-Resolution Cryo Electron MicroscopyU24GM116792 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AGBANDJE-MCKENNA, MAVIS, DOKLAND, TERJE · 2016 to 2020
$3.0M
NCI NIH HHS R01 CA029303NIAID NIH HHS T32 AI007110NIGMS NIH HHS R01 GM033050NIGMS NIH HHS R01 GM082946NIGMS NIH HHS U24 GM116792
6 · The paper itself

Abstract

LuIII, a protoparvovirus pathogenic to rodents, replicates in human mitotic cells, making it applicable for use to kill cancer cells. This virus group includes H-1 parvovirus (H-1PV) and minute virus of mice (MVM). However, LuIII displays enhanced oncolysis compared to H-1PV and MVM, a phenotype mapped to the major capsid viral protein 2 (VP2). This suggests that within LuIII VP2 are determinants for improved tumor lysis. To investigate this, the structure of the LuIII virus-like-particle was determined using single particle cryo-electron microscopy and image reconstruction to 3.17 Å resolution, and compared to the H-1PV and MVM structures. The LuIII VP2 structure, ordered from residue 37 to 587 (C-terminal), had the conserved VP topology and capsid morphology previously reported for other protoparvoviruses. This includes a core β-barrel and α-helix A, a depression at the icosahedral 2-fold and surrounding the 5-fold axes, and a single protrusion at the 3-fold axes. Comparative analysis identified surface loop differences among LuIII, H-1PV, and MVM at or close to the capsid 2- and 5-fold symmetry axes, and the shoulder of the 3-fold protrusions. The 2-fold differences cluster near the previously identified MVM sialic acid receptor binding pocket, and revealed potential determinants of protoparvovirus tumor tropism.

Indexed as

AnimalsCapsidCapsid ProteinsCryoelectron MicroscopyH-1 parvovirusHumansImage Processing, Computer-AssistedImaging, Three-DimensionalMiceMinute Virus of MiceModels, MolecularOncolytic VirusesParvovirusCapsid Proteinscryo-electron microscopyoncolytic virotherapyParvoviridaestructural virology

Identifiers

PMID29084163
PMCPMC5707528
OpenAlexW2766378242

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.