Evidence map›Paper›PMID 29092895›Full record

ArticleThe Journal of cell biology2018

Ubiquitination of the PI3-kinase VPS-34 promotes VPS-34 stability and phagosome maturation.

Jinchao Liu, Meijiao Li, Lin Li, She Chen, Xiaochen Wang

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. eLife · 2022
    Article
  14. Degradation Mechanism of Autophagy-Related Proteins and Research Progress.International journal of molecular sciences · 2022
    Review
  15. Article
  16. The Ubiquitin-Proteasome System in Apoptosis and Apoptotic Cell Clearance.Frontiers in cell and developmental biology · 2022
    Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Jinchao LiuNational Institute of Biological Sciences, Beijing, China.
Meijiao LiNational Laboratory of Biomacromolecules, Chinese Academy of Sciences Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.
Lin LiNational Institute of Biological Sciences, Beijing, China.
She ChenNational Institute of Biological Sciences, Beijing, China.
Xiaochen WangNational Institute of Biological Sciences, Beijing, China wangxiaochen@ibp.ac.cn.ORCID 0000-0002-4344-0925
Chinese Academy of Sciences · CNNational Institute of Biological Sciences, Beijing · CN

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Howard Hughes Medical InstituteNIH HHS P40 OD010440
6 · The paper itself

Abstract

Apoptotic cells generated by programmed cell death are engulfed by phagocytes and enclosed within membrane-bound phagosomes. Maturation of apoptotic cell-containing phagosomes leads to formation of phagolysosomes where cell corpses are degraded. The class III phosphatidylinositol 3-kinase (PI3-kinase) VPS-34 coordinates with PIKI-1, a class II PI3-kinase, to produce PtdIns3P on phagosomes, thus promoting phagosome closure and maturation. Here, we identified UBC-13, an E2 ubiquitin-conjugating enzyme that functions in the same pathway with VPS-34 but in parallel to PIKI-1 to regulate PtdIns3P generation on phagosomes. Loss of

Indexed as

UbiquitinationAnimalsApoptosisCaenorhabditis elegansCaenorhabditis elegans ProteinsClass III Phosphatidylinositol 3-KinasesPhagocytosisPhagosomesPhosphatidylinositol 3-KinasesUbiquitinUbiquitin-Conjugating EnzymesUbiquitin-Protein LigasesCaenorhabditis elegans Proteinschn-1 protein, C elegansClass III Phosphatidylinositol 3-KinasesPhosphatidylinositol 3-KinasesPIKI-1 protein, C elegansUBC-13 protein, C elegansUbiquitinUbiquitin-Conjugating EnzymesUbiquitin-Protein LigasesUev-1 protein, C elegans

Identifiers

PMID29092895
PMCPMC5748982
OpenAlexW2766944946

What Socratic holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.