Evidence map›Paper›PMID 29136216›Full record

ArticleNucleic acids research2018

The eukaryotic linear motif resource - 2018 update.

Marc Gouw, Sushama Michael, Hugo Sámano-Sánchez, Manjeet Kumar, András Zeke, Benjamin Lang, Benoit Bely, Lucía B Chemes, Norman E Davey, Ziqi Deng and 11 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed.

  1. Trial
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  11. Article
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  13. Computational Protein Design - Where it goes?Current medicinal chemistry · 2024
    Review
  14. Article
  15. The SHDRA syndrome-associated geneProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  16. Article
  17. 5-HTInternational journal of molecular sciences · 2023
    Article
  18. Article
  19. Article
  20. Frontiers in cellular and infection microbiology · 2023
    Review

40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Marc GouwStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.
Sushama MichaelStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.
Hugo Sámano-SánchezStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.
Manjeet KumarStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.
András ZekeInstitute of Enzymology, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Budapest H-1117, Hungary.
Benjamin LangStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.
Benoit BelyEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Lucía B ChemesProtein Structure-Function and Engineering Laboratory, Fundación Instituto Leloir and IIBBA-CONICET, Buenos Aires CP 1405, Argentina.
Norman E DaveyUCD School of Medicine & Medical Science, University College Dublin, Belfield, Dublin 4, Ireland.
Ziqi DengStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.
Francesca DiellaStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.
Clara-Marie GürthRuprecht-Karls-Universität, Heidelberg 69117, Germany.
Ann-Kathrin HuberRuprecht-Karls-Universität, Heidelberg 69117, Germany.
Stefan KleinsorgRuprecht-Karls-Universität, Heidelberg 69117, Germany.
Lara S SchlegelRuprecht-Karls-Universität, Heidelberg 69117, Germany.
Nicolás PalopoliDepartment of Science and Technology, Universidad Nacional de Quilmes, CONICET, Bernal B1876BXD, Buenos Aires, Argentina.
Kim V RoeyStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.
Brigitte AltenbergStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.
Attila ReményiInstitute of Enzymology, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Budapest H-1117, Hungary.
Holger DinkelStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.
Toby J GibsonStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Short linear motifs (SLiMs) are protein binding modules that play major roles in almost all cellular processes. SLiMs are short, often highly degenerate, difficult to characterize and hard to detect. The eukaryotic linear motif (ELM) resource (elm.eu.org) is dedicated to SLiMs, consisting of a manually curated database of over 275 motif classes and over 3000 motif instances, and a pipeline to discover candidate SLiMs in protein sequences. For 15 years, ELM has been one of the major resources for motif research. In this database update, we present the latest additions to the database including 32 new motif classes, and new features including Uniprot and Reactome integration. Finally, to help provide cellular context, we present some biological insights about SLiMs in the cell cycle, as targets for bacterial pathogenicity and their functionality in the human kinome.

Indexed as

Databases, ProteinMolecular Sequence AnnotationSoftwareAmino Acid MotifsAnimalsBacteriaBinding SitesCell CycleEukaryotic CellsFungiHost-Pathogen InteractionsHumansInternetModels, MolecularPlantsProtein BindingProteins

Identifiers

PMID29136216
PMCPMC5753338

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.