Evidence map›Paper›PMID 29138425›Full record

ArticleScientific reports2017

Timescale Separation of Positive and Negative Signaling Creates History-Dependent Responses to IgE Receptor Stimulation.

Brooke Harmon, Lily A Chylek, Yanli Liu, Eshan D Mitra, Avanika Mahajan, Edwin A Saada, Benjamin R Schudel, David A Holowka, Barbara A Baird, Bridget S Wilson and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Temporal Modulation of Drug Desensitization Procedures.Current issues in molecular biology · 2022
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Brooke HarmonDepartment of Systems Biology, Sandia National Laboratories, Livermore, CA, USA.
Lily A ChylekDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.
Yanli LiuDepartment of Biotechnology and Bioengineering, Sandia National Laboratories, Livermore, CA, USA.
Eshan D MitraTheoretical Biology and Biophysics Group, Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM, USA.
Avanika MahajanDepartment of Pathology, University of New Mexico School of Medicine, Albuquerque, NM, USA.
Edwin A SaadaDepartment of Systems Biology, Sandia National Laboratories, Livermore, CA, USA.
Benjamin R SchudelDepartment of Biotechnology and Bioengineering, Sandia National Laboratories, Livermore, CA, USA.
David A HolowkaDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.
Barbara A BairdDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.
Bridget S WilsonDepartment of Pathology, University of New Mexico School of Medicine, Albuquerque, NM, USA.
William S HlavacekTheoretical Biology and Biophysics Group, Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM, USA. wish@lanl.gov.ORCID 0000-0003-4383-8711
Anup K SinghBiological and Material Sciences, Sandia National Laboratories, Livermore, CA, USA. aksingh@sandia.gov.
Sandia National Laboratories California · USCornell University · USLos Alamos National Laboratory · USUniversity of New Mexico · US

Funding

UNM TRAININGP50GM085273 · NIGMS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI BEARER, ELAINE L · 2009 to 2018
$26.1M
Hardening Software for Rule-based models-Competitive RevisionR01GM111510 · NIGMS · NORTHERN ARIZONA UNIVERSITY · PI HLAVACEK, WILLIAM S, POSNER, RICHARD G · 2014 to 2023
$2.8M
FISH "N" Chips: A Microfluidic Processor for Isolating and Analyzing MicrobesR01DE020891 · NIDCR · SANDIA CORP-SANDIA NATIONAL LABORATORIES · PI SINGH, ANUP K. · 2009 to 2012
$1.8M
NIDCR NIH HHS R01 DE020891NIGMS NIH HHS P50 GM085273NIGMS NIH HHS R01 GM111510
6 · The paper itself

Abstract

The high-affinity receptor for IgE expressed on the surface of mast cells and basophils interacts with antigens, via bound IgE antibody, and triggers secretion of inflammatory mediators that contribute to allergic reactions. To understand how past inputs (memory) influence future inflammatory responses in mast cells, a microfluidic device was used to precisely control exposure of cells to alternating stimulatory and non-stimulatory inputs. We determined that the response to subsequent stimulation depends on the interval of signaling quiescence. For shorter intervals of signaling quiescence, the second response is blunted relative to the first response, whereas longer intervals of quiescence induce an enhanced second response. Through an iterative process of computational modeling and experimental tests, we found that these memory-like phenomena arise from a confluence of rapid, short-lived positive signals driven by the protein tyrosine kinase Syk; slow, long-lived negative signals driven by the lipid phosphatase Ship1; and slower degradation of Ship1 co-factors. This work advances our understanding of mast cell signaling and represents a generalizable approach for investigating the dynamics of signaling systems.

Indexed as

AnimalsAntibodiesAntigensBasophilsHumansInflammationLab-On-A-Chip DevicesMast CellsPhosphatidylinositol-3,4,5-Trisphosphate 5-PhosphatasesReceptors, IgESignal TransductionSyk KinaseAntibodiesAntigensINPP5D protein, humanPhosphatidylinositol-3,4,5-Trisphosphate 5-PhosphatasesReceptors, IgESyk KinaseSYK protein, human

Identifiers

PMID29138425
PMCPMC5686181
OpenAlexW2767867594

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.