Evidence map›Paper›PMID 29199017›Full record

ArticleCell systems2017

Linear Integration of ERK Activity Predominates over Persistence Detection in Fra-1 Regulation.

Taryn E Gillies, Michael Pargett, Marta Minguet, Alex E Davies, John G Albeck

Abstract read
In one paragraph

Article in Cell systems, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed.

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1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Taryn E GilliesDepartment of Molecular and Cellular Biology, University of California, Davis, CA 95616, USA.
Michael PargettDepartment of Molecular and Cellular Biology, University of California, Davis, CA 95616, USA.
Marta MinguetDepartment of Molecular and Cellular Biology, University of California, Davis, CA 95616, USA.
Alex E DaviesDepartment of Molecular and Cellular Biology, University of California, Davis, CA 95616, USA; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
John G AlbeckDepartment of Molecular and Cellular Biology, University of California, Davis, CA 95616, USA. Electronic address: jgalbeck@ucdavis.edu.

Funding

Staff InvestigatorsP30CA093373 · NCI · UNIVERSITY OF CALIFORNIA DAVIS · PI KC KENT LLOYD · 2002 to 2026
$84.9M
UC Davis MCB T32 Administrative Supplement to Recognize Excellence in Diversity, Equity, Inclusion, and Accessibility (DEIA) MentorshipT32GM007377 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI CHEDIN, FREDERIC LOUIS · 1985 to 2023
$9.9M
The role of dynamics in defining the limits of normal developmental signaling.R01GM115650 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI ALBECK, JOHN G. · 2016 to 2021
$1.8M
NCI NIH HHS P30 CA093373NIGMS NIH HHS R01 GM115650NIGMS NIH HHS T32 GM007377
6 · The paper itself

Abstract

ERK signaling regulates the expression of target genes, but it is unclear how ERK activity dynamics are interpreted. Here, we investigate this question using simultaneous, live, single-cell imaging of two ERK activity reporters and expression of Fra-1, a target gene controlling epithelial cell identity. We find that Fra-1 is expressed in proportion to the amplitude and duration of ERK activity. In contrast to previous "persistence detector" and "selective filter" models in which Fra-1 expression only occurs when ERK activity persists beyond a threshold duration, our observations demonstrate that the network regulating Fra-1 expression integrates total ERK activity and responds to it linearly. However, exploration of a generalized mathematical model of the Fra-1 coherent feedforward loop demonstrates that it can perform either linear integration or persistence detection, depending on the basal mRNA production rate and protein production delays. Our data indicate that significant basal expression and short delays cause Fra-1 to respond linearly to integrated ERK activity.

Indexed as

MAP Kinase Signaling SystemSignal TransductionAnimalsCell DifferentiationEpidermal Growth FactorEpithelial CellsExtracellular Signal-Regulated MAP KinasesFos-Related Antigen 1Genes, ReporterHumansModels, BiologicalProto-Oncogene Proteins c-fosSingle-Cell AnalysisEpidermal Growth FactorExtracellular Signal-Regulated MAP KinasesFos-Related Antigen 1Proto-Oncogene Proteins c-fosc-Fos degradationEGFEGFRFOSL1FRETKTRMAPKRassignal transduction dynamicstranscription

Identifiers

PMID29199017
PMCPMC5746471

What Socratic holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.