Evidence map›Paper›PMID 29208709›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Conserved salt-bridge competition triggered by phosphorylation regulates the protein interactome.

John J Skinner, Sheng Wang, Jiyoung Lee, Colin Ong, Ruth Sommese, Sivaraj Sivaramakrishnan, Wolfgang Koelmel, Maria Hirschbeck, Hermann Schindelin, Caroline Kisker and 3 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Raf Kinase Inhibitory Protein regulates the cAMP-dependent protein kinase signaling pathway through a positive feedback loop.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Article
  12. Review
  13. Review
  14. Review
  15. Article
  16. Methylation-directed glycosylation of chromatin factors represses retrotransposon promoters.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  17. PEBP1/RKIP behavior: a mirror of actin-membrane organization.Cellular and molecular life sciences : CMLS · 2020
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

John J SkinnerBen May Department for Cancer Research, University of Chicago, Chicago, IL 60637.
Sheng WangToyota Technological Institute at Chicago, Chicago, IL 60637.
Jiyoung LeeBen May Department for Cancer Research, University of Chicago, Chicago, IL 60637.
Colin OngBen May Department for Cancer Research, University of Chicago, Chicago, IL 60637.
Ruth SommeseDepartment of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, MN 55455.
Sivaraj SivaramakrishnanDepartment of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, MN 55455.ORCID 0000-0002-9541-6994
Wolfgang KoelmelRudolf Virchow Center for Experimental Biomedicine, University of Würzburg, 97078 Würzburg, Germany.
Maria HirschbeckRudolf Virchow Center for Experimental Biomedicine, University of Würzburg, 97078 Würzburg, Germany.
Hermann SchindelinRudolf Virchow Center for Experimental Biomedicine, University of Würzburg, 97078 Würzburg, Germany.ORCID 0000-0002-2067-3187
Caroline KiskerRudolf Virchow Center for Experimental Biomedicine, University of Würzburg, 97078 Würzburg, Germany.
Kristina LorenzInstitute of Pharmacology and Toxicology, University of Würzburg, 97078 Würzburg, Germany.
Tobin R SosnickDepartment of Biochemistry and Molecular Biology, Institute for Biophysical Dynamics, University of Chicago, Chicago, IL 60637; trsosnic@uchicago.edu m-rosner@uchicago.edu.
Marsha Rich RosnerBen May Department for Cancer Research, University of Chicago, Chicago, IL 60637; trsosnic@uchicago.edu m-rosner@uchicago.edu.

Funding

Kinetic studies of protein foldingR01GM055694 · NIGMS · UNIVERSITY OF CHICAGO · PI SOSNICK, TOBIN R · 2001 to 2022
$7.6M
Signaling Pathways in Neuronal CellsR01GM087630 · NIGMS · UNIVERSITY OF CHICAGO · PI ROSNER, MARSHA R · 2009 to 2013
$1.8M
Regulation of RKIP FunctionR01GM121735 · NIGMS · UNIVERSITY OF CHICAGO · PI ROSNER, MARSHA R · 2017 to 2020
$1.6M
FOLDING OF AN ALPHA-HELICAL COILED COILR29GM055694 · NIGMS · UNIVERSITY OF CHICAGO · PI SOSNICK, TOBIN R · 1996 to 2000
$107k
NIGMS NIH HHS R01 GM055694NIGMS NIH HHS R01 GM087630NIGMS NIH HHS R01 GM121735NIGMS NIH HHS R29 GM055694
6 · The paper itself

Abstract

Phosphorylation is a major regulator of protein interactions; however, the mechanisms by which regulation occurs are not well understood. Here we identify a salt-bridge competition or "theft" mechanism that enables a phospho-triggered swap of protein partners by Raf Kinase Inhibitory Protein (RKIP). RKIP transitions from inhibiting Raf-1 to inhibiting G-protein-coupled receptor kinase 2 upon phosphorylation, thereby bridging MAP kinase and G-Protein-Coupled Receptor signaling. NMR and crystallography indicate that a phosphoserine, but not a phosphomimetic, competes for a lysine from a preexisting salt bridge, initiating a partial unfolding event and promoting new protein interactions. Structural elements underlying the theft occurred early in evolution and are found in 10% of homo-oligomers and 30% of hetero-oligomers including Bax, Troponin C, and Early Endosome Antigen 1. In contrast to a direct recognition of phosphorylated residues by binding partners, the salt-bridge theft mechanism represents a facile strategy for promoting or disrupting protein interactions using solvent-accessible residues, and it can provide additional specificity at protein interfaces through local unfolding or conformational change.

Indexed as

Conserved SequenceProtein Interaction MapsProtein Processing, Post-TranslationalAmino Acid SubstitutionAnimalsbcl-2-Associated X ProteinEvolution, MolecularHumansLysinePhosphatidylethanolamine Binding ProteinPhosphorylationProtein BindingSerineTroponin CVesicular Transport Proteinsbcl-2-Associated X Proteinearly endosome antigen 1LysinePhosphatidylethanolamine Binding ProteinSerineTroponin CVesicular Transport Proteinsconformational changephospho-swapprotein interactionRaf Kinase Inhibitory Proteinsalt-bridge competition

Identifiers

PMID29208709
PMCPMC5754776

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.