Evidence map›Paper›PMID 29237752›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Ser7 of RNAPII-CTD facilitates heterochromatin formation by linking ncRNA to RNAi.

Takuya Kajitani, Hiroaki Kato, Yuji Chikashige, Chihiro Tsutsumi, Yasushi Hiraoka, Hiroshi Kimura, Yasuyuki Ohkawa, Chikashi Obuse, Damien Hermand, Yota Murakami

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 2 countries.

Takuya KajitaniGraduate School of Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan; kajitani@sci.hokudai.ac.jp yota@sci.hokudai.ac.jp.
Hiroaki KatoDepartment of Biochemistry, Shimane University School of Medicine, Izumo, Shimane 693-8501, Japan.
Yuji ChikashigeFrontier Research Laboratory, Advanced ICT Research Institute, National Institute of Information and Communications Technology, Kobe, Hyogo 651-2492, Japan.
Chihiro TsutsumiFrontier Research Laboratory, Advanced ICT Research Institute, National Institute of Information and Communications Technology, Kobe, Hyogo 651-2492, Japan.
Yasushi HiraokaFrontier Research Laboratory, Advanced ICT Research Institute, National Institute of Information and Communications Technology, Kobe, Hyogo 651-2492, Japan.
Hiroshi KimuraGraduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Yokohama 226-8501, Japan.ORCID 0000-0003-0854-083X
Yasuyuki OhkawaDivision of Transcriptomics, Medical Institute of Bioregulation, Japan Science and Technology Agency-Core Research for Evolutional Science and Technology, Kyushu University, Fukuoka 812-8582, Japan.
Chikashi ObuseGraduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan.
Damien HermandNamur Research College, University of Namur, 5000 Namur, Belgium.
Yota MurakamiGraduate School of Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan; kajitani@sci.hokudai.ac.jp yota@sci.hokudai.ac.jp.
National Institute of Information and Communications Technology · JPHokkaido University · JPKyushu University · JPShimane University · JPThe University of Osaka · JPTokyo Institute of Technology · JPUniversity of Namur · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Some long noncoding RNAs (ncRNAs) transcribed by RNA polymerase II (RNAPII) are retained on chromatin, where they regulate RNAi and chromatin structure. The molecular basis of this retention remains unknown. We show that in fission yeast serine 7 (Ser7) of the C-terminal domain (CTD) of RNAPII is required for efficient siRNA generation for RNAi-dependent heterochromatin formation. Surprisingly, Ser7 facilitates chromatin retention of nascent heterochromatic RNAs (hRNAs). Chromatin retention of hRNAs and siRNA generation requires both Ser7 and an RNA-binding activity of the chromodomain of Chp1, a subunit of the RNA-induced transcriptional silencing (RITS) complex. Furthermore, RITS associates with RNAPII in a Ser7-dependent manner. We propose that Ser7 promotes cotranscriptional chromatin retention of hRNA by recruiting the RNA-chromatin connector protein Chp1, which facilitates RNAi-dependent heterochromatin formation. Our findings reveal a function of the CTD code: linking ncRNA transcription to RNAi for heterochromatin formation.

Indexed as

Cell Cycle ProteinsHeterochromatinProtein DomainsRNA, FungalRNA, Long NoncodingRNA Polymerase IIRNA, Small InterferingSchizosaccharomycesSchizosaccharomyces pombe ProteinsSerineCell Cycle ProteinsChp1 protein, S pombeHeterochromatinRNA, FungalRNA, Long NoncodingRNA Polymerase IIRNA, Small InterferingSchizosaccharomyces pombe ProteinsSerineheterochromatinnoncoding RNARNAiRNA polymerase II

Identifiers

PMID29237752
PMCPMC5748204
OpenAlexW2771183728

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.