Evidence map›Paper›PMID 29276487›Full record

ArticleFrontiers in aging neuroscience2017

Hippocampal Transcriptomic Profiles: Subfield Vulnerability to Age and Cognitive Impairment.

Lara Ianov, Matt De Both, Monica K Chawla, Asha Rani, Andrew J Kennedy, Ignazio Piras, Jeremy J Day, Ashley Siniard, Ashok Kumar, J David Sweatt and 3 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in aging neuroscience, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it, 59 citations in OpenAlex.

  1. Pooled it
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  20. Epigenetic Mechanisms of Learning and Memory: Implications for Aging.International journal of molecular sciences · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Lara IanovDepartments of Neuroscience and Genetics and Genomics Program, Evelyn F. and William L. McKnight Brain Institute, University of Florida, Gainesville, FL, United States.
Matt De BothNeurogenomics Division, Translational Genomics Research Institute, Phoenix, AZ, United States.
Monica K ChawlaEvelyn F. McKnight Brain Institute, University of Arizona, Tucson, AZ, United States.
Asha RaniDepartments of Neuroscience and Genetics and Genomics Program, Evelyn F. and William L. McKnight Brain Institute, University of Florida, Gainesville, FL, United States.
Andrew J KennedyEvelyn F. McKnight Brain Institute, University of Alabama, Birmingham, AL, United States.
Ignazio PirasNeurogenomics Division, Translational Genomics Research Institute, Phoenix, AZ, United States.
Jeremy J DayEvelyn F. McKnight Brain Institute, University of Alabama, Birmingham, AL, United States.
Ashley SiniardNeurogenomics Division, Translational Genomics Research Institute, Phoenix, AZ, United States.
Ashok KumarDepartments of Neuroscience and Genetics and Genomics Program, Evelyn F. and William L. McKnight Brain Institute, University of Florida, Gainesville, FL, United States.
J David SweattEvelyn F. McKnight Brain Institute, University of Alabama, Birmingham, AL, United States.
Carol A BarnesEvelyn F. McKnight Brain Institute, University of Arizona, Tucson, AZ, United States.
Matthew J HuentelmanNeurogenomics Division, Translational Genomics Research Institute, Phoenix, AZ, United States.
Thomas C FosterDepartments of Neuroscience and Genetics and Genomics Program, Evelyn F. and William L. McKnight Brain Institute, University of Florida, Gainesville, FL, United States.
Translational Genomics Research Institute · USUniversity of Alabama · USUniversity of Florida · USUniversity of Arizona · USUniversity of Alabama at Birmingham · US

Funding

The Maine Biomedical Research Network (INBRE)P20GM103423 · NIGMS · MOUNT DESERT ISLAND BIOLOGICAL LAB · PI Frederic Xavier Bonnet · 2012 to 2026
$60.0M
University of Florida Older Americans Independence Center (OAIC)P30AG028740 · NIA · UNIVERSITY OF FLORIDA · PI Stephen D Anton · 2007 to 2026
$22.8M
Biochemical Mechanisms of Neural PlasticityR01MH057014 · NIMH · VANDERBILT UNIVERSITY · PI WINDER, DANNY G. · 1996 to 2019
$9.3M
Estrogen and cognition over the lifespanR01AG037984 · NIA · UNIVERSITY OF FLORIDA · PI FOSTER, THOMAS C, KUMAR, ASHOK · 2011 to 2022
$3.3M
Signaling cascades and memory deficits during agingR37AG036800 · NIA · UNIVERSITY OF FLORIDA · PI FOSTER, THOMAS C · 2010 to 2018
$2.6M
Epigenetic Control of Brain Reward SystemsDP1DA039650 · NIDA · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DAY, JEREMY J · 2015 to 2019
$2.3M
Molecular and Behavioral Neurobiology of Transcription Factor TCF4R01MH104158 · NIMH · VANDERBILT UNIVERSITY · PI NISWENDER, COLLEEN M · 2014 to 2018
$1.9M
Use of viral-vectors for studying effects of chronic inflammation on executive functionR01AG052258 · NIA · UNIVERSITY OF FLORIDA · PI FOSTER, THOMAS C · 2016 to 2020
$1.9M
Systemic inflammation in regulating the onset and progression of brain agingR01AG049711 · NIA · UNIVERSITY OF FLORIDA · PI FOSTER, THOMAS C · 2015 to 2019
$1.5M
CATT: Development and Application of a Neuronal Cell Activity-Tagging ToolboxR01AG048907 · NIA · TRANSLATIONAL GENOMICS RESEARCH INST · PI BARNES, CAROL A., HUENTELMAN, MATT · 2014 to 2017
$1.3M
Epigenetic Regulation of Cocaine-Induced NeuroadaptationsR00DA034681 · NIDA · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DAY, JEREMY J · 2014 to 2016
$741k
Estrogen and cognition over the lifespanR56AG037984 · NIA · UNIVERSITY OF FLORIDA · PI FOSTER, THOMAS C · 2010 to 2010
$271k
NIA NIH HHS P30 AG028740NIA NIH HHS R01 AG037984NIA NIH HHS R01 AG048907NIA NIH HHS R01 AG049711NIA NIH HHS R01 AG052258NIA NIH HHS R37 AG036800NIA NIH HHS R56 AG037984NIDA NIH HHS DP1 DA039650NIDA NIH HHS K99 DA034681NIDA NIH HHS R00 DA034681NIGMS NIH HHS P20 GM103423NIMH NIH HHS R01 MH057014NIMH NIH HHS R01 MH104158
6 · The paper itself

Abstract

The current study employed next-generation RNA sequencing to examine gene expression differences related to brain aging, cognitive decline, and hippocampal subfields. Young and aged rats were trained on a spatial episodic memory task. Hippocampal regions CA1, CA3, and the dentate gyrus were isolated. Poly-A mRNA was examined using two different sequencing platforms, Illumina, and Ion Proton. The Illumina platform was used to generate seed lists of genes that were statistically differentially expressed across regions, ages, or in association with cognitive function. The gene lists were then retested using the data from the Ion Proton platform. The results indicate hippocampal subfield differences in gene expression and point to regional differences in vulnerability to aging. Aging was associated with increased expression of immune response-related genes, particularly in the dentate gyrus. For the memory task, impaired performance of aged animals was linked to the regulation of Ca

Indexed as

agingcognitive functiongene expressionhippocampusIllumina HiSeqIon protontranscription

Identifiers

PMID29276487
PMCPMC5727020
OpenAlexW2771522079

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.