Evidence map›Paper›PMID 29307839›Full record

ArticleCell chemical biology2018

Target Identification and Mechanism of Action of Picolinamide and Benzamide Chemotypes with Antifungal Properties.

Verena Pries, Christina Nöcker, Danish Khan, Philipp Johnen, Zebin Hong, Ashutosh Tripathi, Anna-Lena Keller, Michael Fitz, Francesca Perruccio, Ireos Filipuzzi and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
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  8. Biological and computational studies provide insights intoBiochemistry and biophysics reports · 2021
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  10. Chemical-Genetic Interactions as a Means to Characterize Drug Synergy.Methods in molecular biology (Clifton, N.J.) · 2021
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 3 countries.

Verena PriesNovartis Institutes for BioMedical Research, Novartis Pharma AG, Forum 1 Novartis Campus, 4056 Basel, Switzerland; Institute of Crop Science and Resource Conservation, Universität Bonn, Karlrobert-Kreiten-Strasse 13, 53113 Bonn, Germany.
Christina NöckerMax-Planck-Institute for Molecular Physiology, Otto-Hahn-Strasse 11, 44227 Dortmund, Germany; Technische Universität Dortmund, Fakultät für Chemie und Chemische Biologie, Otto-Hahn-Strasse 4a, 44227 Dortmund, Germany.
Danish KhanDepartment of Biochemistry and Biophysics, Texas A & M University, College Station, TX 77843, USA; Department of Molecular and Cellular Medicine, Texas A & M University Health Science Center, College Station, TX 77843-1114, USA.
Philipp JohnenCenter for Plant Molecular Biology, Universität Tübingen, Auf der Morgenstelle 32, 72076 Tübingen, Germany; Institute of Crop Science and Resource Conservation, Universität Bonn, Karlrobert-Kreiten-Strasse 13, 53113 Bonn, Germany.
Zebin HongMax Planck Institute for Developmental Biology, Spemannstrasse 35, 72076 Tübingen, Germany.
Ashutosh TripathiDepartment of Biochemistry and Biophysics, Texas A & M University, College Station, TX 77843, USA; Department of Molecular and Cellular Medicine, Texas A & M University Health Science Center, College Station, TX 77843-1114, USA.
Anna-Lena KellerCenter for Plant Molecular Biology, Universität Tübingen, Auf der Morgenstelle 32, 72076 Tübingen, Germany.
Michael FitzCenter for Plant Molecular Biology, Universität Tübingen, Auf der Morgenstelle 32, 72076 Tübingen, Germany.
Francesca PerruccioNovartis Institutes for BioMedical Research, Novartis Pharma AG, Forum 1 Novartis Campus, 4056 Basel, Switzerland.
Ireos FilipuzziNovartis Institutes for BioMedical Research, Novartis Pharma AG, Forum 1 Novartis Campus, 4056 Basel, Switzerland.
Sasikala ThavamMax-Planck-Institute for Molecular Physiology, Otto-Hahn-Strasse 11, 44227 Dortmund, Germany; Technische Universität Dortmund, Fakultät für Chemie und Chemische Biologie, Otto-Hahn-Strasse 4a, 44227 Dortmund, Germany.
Thomas AustNovartis Institutes for BioMedical Research, Novartis Pharma AG, Forum 1 Novartis Campus, 4056 Basel, Switzerland.
Ralph RiedlNovartis Institutes for BioMedical Research, Novartis Pharma AG, Forum 1 Novartis Campus, 4056 Basel, Switzerland.
Slava ZieglerMax-Planck-Institute for Molecular Physiology, Otto-Hahn-Strasse 11, 44227 Dortmund, Germany; Technische Universität Dortmund, Fakultät für Chemie und Chemische Biologie, Otto-Hahn-Strasse 4a, 44227 Dortmund, Germany.
Fulvia BonoMax Planck Institute for Developmental Biology, Spemannstrasse 35, 72076 Tübingen, Germany.
Gabriel SchaafCenter for Plant Molecular Biology, Universität Tübingen, Auf der Morgenstelle 32, 72076 Tübingen, Germany; Institute of Crop Science and Resource Conservation, Universität Bonn, Karlrobert-Kreiten-Strasse 13, 53113 Bonn, Germany.
Vytas A BankaitisDepartment of Biochemistry and Biophysics, Texas A & M University, College Station, TX 77843, USA; Department of Molecular and Cellular Medicine, Texas A & M University Health Science Center, College Station, TX 77843-1114, USA.
Herbert WaldmannMax-Planck-Institute for Molecular Physiology, Otto-Hahn-Strasse 11, 44227 Dortmund, Germany; Technische Universität Dortmund, Fakultät für Chemie und Chemische Biologie, Otto-Hahn-Strasse 4a, 44227 Dortmund, Germany.
Dominic HoepfnerNovartis Institutes for BioMedical Research, Novartis Pharma AG, Forum 1 Novartis Campus, 4056 Basel, Switzerland. Electronic address: dominic.hoepfner@novartis.com.
Novartis (Switzerland) · CHMax Planck Institute of Molecular Physiology · DEUniversity of Tübingen · DEMax Planck Institute for Developmental Biology · DETexas A&M Health Science Center · USUniversity of Bonn · DETexas A&M University · US

Funding

Role of the Phospholipids in Golgi Secretory FunctionR01GM044530 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BANKAITIS, VYTAS A · 1991 to 2019
$5.6M
NIGMS NIH HHS R01 GM044530
6 · The paper itself

Abstract

Invasive fungal infections are accompanied by high mortality rates that range up to 90%. At present, only three different compound classes are available for use in the clinic, and these often suffer from low bioavailability, toxicity, and drug resistance. These issues emphasize an urgent need for novel antifungal agents. Herein, we report the identification of chemically versatile benzamide and picolinamide scaffolds with antifungal properties. Chemogenomic profiling and biochemical assays with purified protein identified Sec14p, the major phosphatidylinositol/phosphatidylcholine transfer protein in Saccharomyces cerevisiae, as the sole essential target for these compounds. A functional variomics screen identified resistance-conferring residues that localized to the lipid-binding pocket of Sec14p. Determination of the X-ray co-crystal structure of a Sec14p-compound complex confirmed binding in this cavity and rationalized both the resistance-conferring residues and the observed structure-activity relationships. Taken together, these findings open new avenues for rational compound optimization and development of novel antifungal agents.

Indexed as

AmidesAmino Acid SequenceAntifungal AgentsAspergillusBenzamidesBinding SitesCandida albicansCrystallography, X-RayDrug Resistance, FungalMicrobial Sensitivity TestsMolecular Dynamics SimulationMutagenesis, Site-DirectedPhospholipid Transfer ProteinsPicolinic AcidsProtein Structure, TertiarySaccharomyces cerevisiaeAmidesAntifungal AgentsBenzamidesPhospholipid Transfer ProteinspicolinamidePicolinic AcidsSaccharomyces cerevisiae Proteinsantifungalbenzamidechemogenomicsco-crystalfunctional variomicslipid-transfer proteinpicolinamideSec14ptarget identification

Identifiers

PMID29307839
PMCPMC5856591
OpenAlexW2781590142

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.