Evidence map›Paper›PMID 29410367›Full record

ArticleInternational journal of antimicrobial agents2018

Identification of a small molecule inhibitor of the aminoglycoside 6'-N-acetyltransferase type Ib [AAC(6')-Ib] using mixture-based combinatorial libraries.

Tung Tran, Kevin Chiem, Saumya Jani, Brock A Arivett, David L Lin, Rupali Lad, Verónica Jimenez, Mary B Farone, Ginamarie Debevec, Radleigh Santos and 3 more

Open access · greenAbstract read
In one paragraph

Article in International journal of antimicrobial agents, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.9field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. The VirtuousAntibiotics (Basel, Switzerland) · 2023
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Aminoglycoside 6'-Antibiotics (Basel, Switzerland) · 2020
    Article
  12. Review
  13. SmallFrontiers in microbiology · 2019
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Tung TranCenter for Applied Biotechnology Studies, Department of Biological Science, College of Natural Sciences and Mathematics, California State University Fullerton, Fullerton, CA.
Kevin ChiemCenter for Applied Biotechnology Studies, Department of Biological Science, College of Natural Sciences and Mathematics, California State University Fullerton, Fullerton, CA.
Saumya JaniCenter for Applied Biotechnology Studies, Department of Biological Science, College of Natural Sciences and Mathematics, California State University Fullerton, Fullerton, CA.
Brock A ArivettDepartment of Biology, Middle Tennessee State University, Murfreesboro, TN; Department of Chemistry, Middle Tennessee State University, Murfreesboro, TN.
David L LinCenter for Applied Biotechnology Studies, Department of Biological Science, College of Natural Sciences and Mathematics, California State University Fullerton, Fullerton, CA.
Rupali LadCenter for Applied Biotechnology Studies, Department of Biological Science, College of Natural Sciences and Mathematics, California State University Fullerton, Fullerton, CA.
Verónica JimenezCenter for Applied Biotechnology Studies, Department of Biological Science, College of Natural Sciences and Mathematics, California State University Fullerton, Fullerton, CA.
Mary B FaroneDepartment of Biology, Middle Tennessee State University, Murfreesboro, TN.
Ginamarie DebevecTorrey Pines Institute for Molecular Studies, Port St. Lucie, FL.
Radleigh SantosTorrey Pines Institute for Molecular Studies, Port St. Lucie, FL.
Marc GiulianottiTorrey Pines Institute for Molecular Studies, Port St. Lucie, FL.
Clemencia PinillaTorrey Pines Institute for Molecular Studies, San Diego, CA. Electronic address: pinilla@tpims.org.
Marcelo E TolmaskyCenter for Applied Biotechnology Studies, Department of Biological Science, College of Natural Sciences and Mathematics, California State University Fullerton, Fullerton, CA. Electronic address: mtolmasky@fullerton.edu.
California State University, Fullerton · USTorrey Pines Institute For Molecular Studies · USMiddle Tennessee State University · US

Funding

DEALING WITH ANTIBIOTIC RESISTANCE--ANTISENSE TECHNOLOGYR15AI047115 · NIAID · CALIFORNIA STATE UNIVERSITY FULLERTON · PI TOLMASKY, MARCELO E · 2000 to 2022
$1.8M
NIAID NIH HHS R15 AI047115
6 · The paper itself

Abstract

The aminoglycoside, 6'-N-acetyltransferase type Ib [AAC(6')-Ib] is the most widely distributed enzyme among AAC(6')-I-producing Gram-negative pathogens and confers resistance to clinically relevant aminoglycosides, including amikacin. This enzyme is therefore an ideal target for enzymatic inhibitors that could overcome resistance to aminoglycosides. The search for inhibitors was carried out using mixture-based combinatorial libraries, the scaffold ranking approach, and the positional scanning strategy. A library with high inhibitory activity had pyrrolidine pentamine scaffold and was selected for further analysis. This library contained 738,192 compounds with functionalities derived from 26 different amino acids (R1, R2 and R3) and 42 different carboxylic acids (R4) in four R-group functionalities. The most active compounds all contained S-phenyl (R1 and R3) and S-hydromethyl (R2) functionalities at three locations and differed at the R4 position. The compound containing 3-phenylbutyl at R4 (compound 206) was a robust enzymatic inhibitor in vitro, in combination with amikacin it potentiated the inhibition of growth of three resistant bacteria in culture, and it improved survival when used as treatment of Galleria mellonella infected with aac(6')-Ib-harboring Klebsiella pneumoniae and Acinetobacter baumannii strains.

Indexed as

AcetyltransferasesAcinetobacter baumanniiAmino AcidsAnimalsAnti-Bacterial AgentsDose-Response Relationship, DrugDrug Evaluation, PreclinicalEnzyme InhibitorsEscherichia coliHEK293 CellsHumansKlebsiella pneumoniaePyrrolidinesSmall Molecule LibrariesStructure-Activity RelationshipAcetyltransferasesAmino Acidsaminoglycoside N(6')-acetyltransferaseAnti-Bacterial AgentsEnzyme InhibitorspyrrolidinePyrrolidinesSmall Molecule LibrariesAcetyltransferaseAminoglycosideCombinatorial librariesEnterobacteriaceaeESKAPEHospital infection

Identifiers

PMID29410367
PMCPMC6592615
OpenAlexW2763755629

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.