Evidence map›Paper›PMID 29414706›Full record

ArticleBiophysical journal2018

Solution Structure of an Intramembrane Aspartyl Protease via Small Angle Neutron Scattering.

Swe-Htet Naing, Ryan C Oliver, Kevin L Weiss, Volker S Urban, Raquel L Lieberman

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Taking a position on intramembrane proteolysis.The Journal of biological chemistry · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Swe-Htet NaingSchool of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia.
Ryan C OliverNeutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee.
Kevin L WeissNeutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee.
Volker S UrbanNeutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee. Electronic address: urbanvs@ornl.gov.
Raquel L LiebermanSchool of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia. Electronic address: raquel.lieberman@chemistry.gatech.edu.
Oak Ridge National Laboratory · USGeorgia Institute of Technology · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Intramembrane aspartyl proteases (IAPs) comprise one of four families of integral membrane proteases that hydrolyze substrates within the hydrophobic lipid bilayer. IAPs include signal peptide peptidase, which processes remnant signal peptides from nascent polypeptides in the endoplasmic reticulum, and presenilin, the catalytic component of the γ-secretase complex that processes Notch and amyloid precursor protein. Despite their broad biomedical reach, basic structure-function relationships of IAPs remain active areas of research. Characterization of membrane-bound proteins is notoriously challenging due to their inherently hydrophobic character. For IAPs, oligomerization state in solution is one outstanding question, with previous proposals for monomer, dimer, tetramer, and octamer. Here we used small angle neutron scattering (SANS) to characterize n-dodecyl-β-D-maltopyranoside (DDM) detergent solutions containing and absent a microbial IAP ortholog. A unique feature of SANS is the ability to modulate the solvent composition to mask all but the enzyme of interest. The signal from the IAP was enhanced by deuteration and, uniquely, scattering from DDM and buffers were matched by the use of both tail-deuterated DDM and D

Indexed as

NeutronsScattering, Small AngleAnimalsAspartic Acid ProteasesCell MembraneHumansMaltoseModels, MolecularSubstrate SpecificityAspartic Acid Proteasesdodecyl maltopyranosideMaltose

Identifiers

PMID29414706
PMCPMC5985038
OpenAlexW2785749944

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.