Evidence map›Paper›PMID 29421402›Full record

ArticleEnvironment international2018

Serum homocysteine, arsenic methylation, and arsenic-induced skin lesion incidence in Bangladesh: A one-carbon metabolism candidate gene study.

Megan M Niedzwiecki, Xinhua Liu, Huiping Zhu, Megan N Hall, Vesna Slavkovich, Vesna Ilievski, Diane Levy, Abu B Siddique, Muhammad G Kibriya, Faruque Parvez and 7 more

Open access · greenAbstract read
In one paragraph

Article in Environment international, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Pooled it
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  6. Review
  7. Observational
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 2 countries.

Megan M NiedzwieckiDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY, USA. Electronic address: megan.niedzwiecki@mssm.edu.
Xinhua LiuDepartment of Biostatistics, Mailman School of Public Health, Columbia University, New York, NY, USA.
Huiping ZhuDepartment of Pediatrics, University of Texas at Austin Dell Medical School, Austin, TX, USA.
Megan N HallDepartment of Epidemiology, Mailman School of Public Health, Columbia University, New York, NY, USA.
Vesna SlavkovichDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY, USA.
Vesna IlievskiDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY, USA.
Diane LevyDepartment of Biostatistics, Mailman School of Public Health, Columbia University, New York, NY, USA.
Abu B SiddiqueColumbia University Arsenic Project in Bangladesh, Dhaka, Bangladesh.
Muhammad G KibriyaDepartment of Public Health Sciences, University of Chicago, Chicago, IL, USA.
Faruque ParvezDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY, USA.
Tariqul IslamUniversity of Chicago Research Bangladesh, Dhaka, Bangladesh.
Alauddin AhmedUniversity of Chicago Research Bangladesh, Dhaka, Bangladesh.
Ana Navas-AcienDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY, USA.
Joseph H GrazianoDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY, USA.
Richard H FinnellDepartment of Pediatrics, University of Texas at Austin Dell Medical School, Austin, TX, USA.
Habibul AhsanDepartment of Public Health Sciences, University of Chicago, Chicago, IL, USA.
Mary V GambleDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY, USA. Electronic address: mvg7@cumc.columbia.edu.
Columbia University · USChicago Department of Public Health · USThe University of Texas at Austin · USUniversity of Chicago Research Bangladesh · BDColumbia University Irving Medical Center · USNew York University · US

Funding

Training CoreP42ES010349 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI NAVAS-ACIEN, ANA · 2000 to 2020
$53.6M
True Metal fac coreP30ES009089 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Steven N. Chillrud · 1998 to 2026
$44.7M
Pilot Program CoreP30ES027792 · NIEHS · UNIVERSITY OF CHICAGO · PI Gokhan M. Mutlu, Gail S Prins · 2017 to 2026
$13.6M
CANCER EPIDEMIOLOGY/BIOSTATISTICS/ENVIRONMENTAL SCIENCEST32CA009529 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI NEUGUT, ALFRED I. · 1985 to 2012
$4.3M
Folic Acid, Parental Mutation Rates and the Risk for Neural Tube DefectsR01HD081216 · NICHD · UNIVERSITY OF TEXAS AT AUSTIN · PI FINNELL, RICHARD H., LEI, YUNPING · 2015 to 2019
$2.5M
Folic Acid and Creatine as Therapeutic Approaches for Lowering Blood ArenicR01CA133595 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GAMBLE, MARY · 2009 to 2013
$2.3M
Biomarkers for Arsenic Toxicity: Genetics, Epigenetics and FolateR01ES017875 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GAMBLE, MARY · 2010 to 2013
$1.9M
Perkin-Elmer NexION-300D Inductively Coupled Mass Spectrometer (ICP-MS)S10OD016384 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GRAZIANO, JOSEPH H · 2014 to 2014
$181k
NCI NIH HHS R01 CA133595NCI NIH HHS T32 CA009529NICHD NIH HHS R01 HD081216NIEHS NIH HHS L30 ES013449NIEHS NIH HHS P30 ES009089NIEHS NIH HHS R01 ES017875NIH HHS S10 OD016384
6 · The paper itself

Abstract

backgroundInorganic arsenic (As) is methylated via one carbon metabolism (OCM) to mono- and dimethylated arsenicals (MMA and DMA), facilitating urinary excretion. Hyperhomocysteinemia (HHcys), a marker of impaired OCM, is a risk factor for As-induced skin lesions, but the influences of single nucleotide polymorphisms (SNPs) in OCM genes on Hcys, As metabolism and skin lesion risk is unclear.

objectivesTo (i) explore genetic sources of Hcys and the causal role of HHcys in As-induced skin lesion development using OCM genetic proxies for HHcys and (ii) identify OCM SNPs associated with urinary As metabolite proportions and/or skin lesion incidence.

methodsWe conducted a case-control study nested in the Health Effects of Arsenic Longitudinal Study (HEALS) in Bangladesh which 876 incident skin lesion cases were matched to controls on sex, age, and follow-up time. We measured serum Hcys, urinary As metabolites, and 26 SNPs in 13 OCM genes.

resultsSerum Hcys and urinary %DMA were independently associated with increased and decreased odds of skin lesions, respectively. The T allele of MTHFR 677 C ➔ T (rs1801133) was associated with HHcys, higher %MMA, and lower %DMA, but not with skin lesions. Interactions between SNPs and water As on skin lesion risk were suggestive for three variants: the G allele of MTRR rs1801394 and T allele of FOLR1 rs1540087 were associated with lower odds of skin lesions with lower As (≤50 μg/L), and the T allele of TYMS rs1001761 was associated with higher odds of skin lesions with higher As.

conclusionsWhile HHcys and decreased %DMA were associated with increased risk for skin lesions, and MTHFR 677 C ➔ T was a strong predictor of HHcys, MTHFR 677 C ➔ T was not associated with skin lesion risk. Future studies should explore (i) non-OCM and non-genetic determinants of Hcys and (ii) if genetic findings are replicated in other As-exposed populations, mechanisms by which OCM SNPs may influence the dose-dependent effects of As on skin lesion risk.

Indexed as

ArsenicSkin DiseasesArsenicalsBangladeshCase-Control StudiesGenetic Predisposition to DiseaseHomocysteineHumansMethylationPolymorphism, Single NucleotideArsenicArsenicalsHomocysteineArsenicArsenic metabolismGene-environment interactionHomocysteineOne-carbon metabolismSkin lesions

Identifiers

PMID29421402
PMCPMC5873983
OpenAlexW2792457477

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.