Evidence map›Paper›PMID 29491739›Full record

ArticleCurrent genomics2018

Biology of

Francisco Macías, Raquel Afonso-Lehmann, Manuel C López, Inmaculada Gómez, M Carmen Thomas

Abstract read
In one paragraph

Article in Current genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. ClinicalbioRxiv : the preprint server for biology · 2025
    Article
  2. Article
  3. Article
  4. Whole Genome Assembly of a HybridbioRxiv : the preprint server for biology · 2023
    Article
  5. Review
  6. Tropical medicine and infectious disease · 2020
    Review
  7. Review
  8. An Evolutionary View ofFrontiers in cellular and infection microbiology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Francisco MacíasDepartamento de Biología Molecular, Instituto de Parasitología y Biomedicina López Neyra-CSIC, Consejo Superior de Investigaciones Científicas (IPBLN-CSIC). PTS-Granada. Avda. del Conocimiento S/N, 18016-Granada, Spain.
Raquel Afonso-LehmannDepartamento de Biología Molecular, Instituto de Parasitología y Biomedicina López Neyra-CSIC, Consejo Superior de Investigaciones Científicas (IPBLN-CSIC). PTS-Granada. Avda. del Conocimiento S/N, 18016-Granada, Spain.
Manuel C LópezDepartamento de Biología Molecular, Instituto de Parasitología y Biomedicina López Neyra-CSIC, Consejo Superior de Investigaciones Científicas (IPBLN-CSIC). PTS-Granada. Avda. del Conocimiento S/N, 18016-Granada, Spain.
Inmaculada GómezDepartamento de Biología Molecular, Instituto de Parasitología y Biomedicina López Neyra-CSIC, Consejo Superior de Investigaciones Científicas (IPBLN-CSIC). PTS-Granada. Avda. del Conocimiento S/N, 18016-Granada, Spain.
M Carmen ThomasDepartamento de Biología Molecular, Instituto de Parasitología y Biomedicina López Neyra-CSIC, Consejo Superior de Investigaciones Científicas (IPBLN-CSIC). PTS-Granada. Avda. del Conocimiento S/N, 18016-Granada, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionAn important portion of the Trypanosoma cruzi genome is composed of mobile genetic elements, which are interspersed with genes on all chromosomes. The L1Tc non-LTR retrotransposon and its truncated version NARTc are the most highly represented and best studied of these elements. L1Tc is actively transcribed in all three forms of the Trypanosoma parasite and encodes the proteins that enable it to autonomously mobilize. This mini review discusses the enzymatic properties of L1Tc that enable its mobilization and possibly the mobilization of other non-autonomous retrotransposons in Trypanosoma. We also briefly review the Hepatitis Delta Virus-like autocatalytic and 2A self-cleaving viral-like sequences contained in L1Tc that regulate post-transcriptional properties such as relative protein abundance and mRNA stability. Special emphasis is placed on the Pr77 dual system, which is based on the RNA pol II-dependent internal promoter of L1Tc and NARTc and the HDV-like ribozyme activity encoded by the first 77 nucleotides of the element's DNA and RNA. The high degree of conservation of the Pr77 sequence, referred to as the "Pr77-hallmark", among different trypanosomatid retroelements suggests that these mobile elements are responsible for the distribution of regulatory sequences within the genome they inhabit.

conclusionWe also discuss how the involvement of L1Tc and NARTc in the gene regulatory processes of these parasites could justify their domestication and long-term coexistence in these ancient organisms.

Indexed as

2A-self cleaving sequenceAP endonucleaseHDV-like ribozymeNon-LTR retrotransposonNucleic acids chaperonePromoterRNAse HTrypanosomatid

Identifiers

PMID29491739
PMCPMC5814959

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.