Evidence map›Paper›PMID 29499183›Full record

ArticleExperimental eye research2018

An early nonsense mutation facilitates the expression of a short isoform of CNGA3 by alternative translation initiation.

Joachim Täger, Susanne Kohl, David G Birch, Dianna K H Wheaton, Bernd Wissinger, Peggy Reuter

Open access · greenAbstract read
In one paragraph

Article in Experimental eye research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Review
  3. Achromatopsia: Genetics and Gene Therapy.Molecular diagnosis & therapy · 2022
    Review
  4. Paternal Uniparental Isodisomy of Chromosome 2 in a Patient withInternational journal of molecular sciences · 2021
    Article
  5. Sensing through Non-Sensing Ocular Ion Channels.International journal of molecular sciences · 2020
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Joachim TägerMolecular Genetics Laboratory, Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany; Graduate School of Cellular and Molecular Neuroscience, University of Tübingen, Tübingen, Germany.
Susanne KohlMolecular Genetics Laboratory, Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany.
David G BirchRetina Foundation of the Southwest, Dallas, TX, USA.
Dianna K H WheatonRetina Foundation of the Southwest, Dallas, TX, USA.
Bernd WissingerMolecular Genetics Laboratory, Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany. Electronic address: wissinger@uni-tuebingen.de.
Peggy ReuterMolecular Genetics Laboratory, Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany. Electronic address: peggy.reuter@med.uni-tuebingen.de.
University of Tübingen · DERetina Foundation of the Southwest · USBernstein Center for Computational Neuroscience Tübingen · DE

Funding

MEASURES OF HUMAN RECEPTOR AND POST RECEPTOR ACTIVITYR01EY009076 · NEI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI BIRCH, DAVID G, HOOD, DONALD C. · 1991 to 2021
$8.3M
NEI NIH HHS R01 EY009076
6 · The paper itself

Abstract

The cyclic nucleotide-gated (CNG) channel - composed of CNGA3 and CNGB3 subunits - mediates the influx of cations in cone photoreceptors after light stimulation and thus is a key element in cone phototransduction. Mutations in CNGA3 and CNGB3 are associated with achromatopsia, a rare autosomal recessive retinal disorder. Here, we demonstrate that the presence of an early nonsense mutation in CNGA3 induces the usage of a downstream alternative translation initiation site giving rise to a short CNGA3 isoform. The expression of this short isoform was verified by Western blot analysis and DAB staining of HEK293 cells and cone photoreceptor-like 661W cells expressing CNGA3-GST fusion constructs. Functionality of the short isoform was confirmed by a cellular calcium influx assay. Furthermore, patients carrying an early nonsense mutation were analyzed for residual cone photoreceptor function in order to identify a potential role of the short isoform to modify the clinical outcome in achromatopsia patients. Yet the results suggest that the short isoform is not able to compensate for the loss of the long isoform leaving the biological role of this variant unclear.

Indexed as

AnimalsBlotting, WesternCell LineCodon, NonsenseColor Vision DefectsCyclic Nucleotide-Gated Cation ChannelsElectrophoresis, Polyacrylamide GelGene Expression RegulationHEK293 CellsHumansImmunohistochemistryMicePeptide Chain Initiation, TranslationalPolymerase Chain ReactionProtein IsoformsRetinal Cone Photoreceptor CellsCNGA3 protein, humanCodon, NonsenseCyclic Nucleotide-Gated Cation ChannelsProtein IsoformsAchromatopsiaAlternative translation initiation siteCNGA3Cone photoreceptor

Identifiers

PMID29499183
PMCPMC7061521
OpenAlexW2791589830

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.