Evidence map›Paper›PMID 29545792›Full record

ArticleFrontiers in immunology2018

Coupling of Single Molecule, Long Read Sequencing with IMGT/HighV-QUEST Analysis Expedites Identification of SIV gp140-Specific Antibodies from scFv Phage Display Libraries.

Seung Yub Han, Alesia Antoine, David Howard, Bryant Chang, Woo Sung Chang, Matthew Slein, Gintaras Deikus, Sofia Kossida, Patrice Duroux, Marie-Paule Lefranc and 3 more

Abstract read
In one paragraph

Article in Frontiers in immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. IMGTAntibodies (Basel, Switzerland) · 2026
    Review
  2. Article
  3. Review
  4. IMGTBiomolecules · 2022
    Article
  5. IMGTMethods in molecular biology (Clifton, N.J.) · 2022
    Article
  6. Article
  7. Review
  8. Review
  9. Long-read amplicon denoising.Nucleic acids research · 2019
    Article
  10. IMGTAntibodies (Basel, Switzerland) · 2019
    Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Seung Yub HanBiology Department, Boston College, Chestnut Hill, MA, United States.
Alesia AntoineDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, Icahn Institute of Genomics and Multiscale Biology, New York, NY, United States.
David HowardBiology Department, Boston College, Chestnut Hill, MA, United States.
Bryant ChangBiology Department, Boston College, Chestnut Hill, MA, United States.
Woo Sung ChangBiology Department, Boston College, Chestnut Hill, MA, United States.
Matthew SleinBiology Department, Boston College, Chestnut Hill, MA, United States.
Gintaras DeikusDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, Icahn Institute of Genomics and Multiscale Biology, New York, NY, United States.
Sofia KossidaThe international ImMunoGeneTics information system® (IMGT®), Laboratoire d'ImmunoGénétique Moléculaire (LIGM), Institut de Génétique Humaine (IGH), UMR CNRS, Montpellier University, Montpellier, France.
Patrice DurouxThe international ImMunoGeneTics information system® (IMGT®), Laboratoire d'ImmunoGénétique Moléculaire (LIGM), Institut de Génétique Humaine (IGH), UMR CNRS, Montpellier University, Montpellier, France.
Marie-Paule LefrancThe international ImMunoGeneTics information system® (IMGT®), Laboratoire d'ImmunoGénétique Moléculaire (LIGM), Institut de Génétique Humaine (IGH), UMR CNRS, Montpellier University, Montpellier, France.
Robert P SebraDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, Icahn Institute of Genomics and Multiscale Biology, New York, NY, United States.
Melissa L SmithDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, Icahn Institute of Genomics and Multiscale Biology, New York, NY, United States.
Ismael Ben F FofanaBiology Department, Boston College, Chestnut Hill, MA, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The simian immunodeficiency virus (SIV)/macaque model of human immunodeficiency virus (HIV)/acquired immunodeficiency syndrome pathogenesis is critical for furthering our understanding of the role of antibody responses in the prevention of HIV infection, and will only increase in importance as macaque immunoglobulin (IG) gene databases are expanded. We have previously reported the construction of a phage display library from a SIV-infected rhesus macaque (

Indexed as

Antibodies, ViralAntibody SpecificityPeptide LibrarySingle-Chain AntibodiesAnimalsGene Products, envHigh-Throughput Nucleotide SequencingHumansMacaca mulattaSimian Immunodeficiency VirusAntibodies, ViralGene Products, envPeptide LibrarySingle-Chain AntibodiesantibodyInternational ImMunoGeneTics information system/HighV-QUESTPacBio sequencingphage displayrhesus macaquesimian immunodeficiency virussingle chain fragment variable library

Identifiers

PMID29545792
PMCPMC5837965

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.